HHsearch alignment for GI: 254780332 and conserved domain: smart00382
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.64 E-value=0.00043 Score=50.61 Aligned_cols=125 Identities=26% Similarity=0.303 Sum_probs=69.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE 297 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~ 297 (504)
T Consensus 1 ~~~~ill~G~~GsGKTtl~~~la~~~~~---------------~~~~v~~~~~~~~~~~~~~~~~--------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP---------------PGGGVIYIDGEDILEEVLDQLL--------------- 50 (148)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCC---------------CCCCEEEEEHHHHHHHHHHHHH---------------
T ss_conf 9978999999970299999999987266---------------8996899875998988898765---------------
Q ss_pred CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 37688998999999986278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r 298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK 377 (504)
Q Consensus 298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK 377 (504)
T Consensus 51 -----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~viiiDei~~~~~~~~~~---~~~~~~~~~~~~ 109 (148)
T smart00382 51 -----------------LIIVGGKKASGSGELRLR-LALALARKLKPDVLILDEITSLLDAEQEA---LLLLLEELRLLL 109 (148)
T ss_pred -----------------HHHHCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEECCHHHCCCCCHH---HHHHHHHHHHHC
T ss_conf -----------------300011221051999999-99999984499899982750214762079---999999999851
Q ss_pred HHHHHHCCCEEEEEEC
Q ss_conf 9998827919997713
Q gi|254780332|r 378 ALAKELNIPIIALSQL 393 (504)
Q Consensus 378 ~lA~e~~ipvi~lsQL 393 (504)
T Consensus 110 ~~~~~~~~~vi~~~n~ 125 (148)
T smart00382 110 LLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCCCCEEEEEEECC
T ss_conf 7657899899995699