HHsearch alignment for GI: 254780332 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.10 E-value=0.02 Score=37.98 Aligned_cols=137 Identities=18% Similarity=0.117 Sum_probs=74.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC-CCCHHHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf 267762131002769999999999851011123333321247975899958-5217999878999987410--1100012
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL-EMSSEQLATRIISEQTEVP--SSKIRRG 296 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl-EMs~~el~~R~is~~s~I~--~~~i~~g 296 (504)
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~-------------~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~ 91 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRG-------------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGG 91 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCC-------------CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9889989999609999999999986338-------------997599990859999999988601021020445565247
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 13768899899999998627--80782589988999999886402-2444746776713532566443211378899999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKL--PLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGIT 373 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is 373 (504)
T Consensus 92 ~~~-------~~~~~~~~~~~~~i~i-----~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~-----~~~~~~~~-- 152 (201)
T smart00487 92 DSK-------REQLRKLESGKTDILV-----TTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-----GFGDQLEK-- 152 (201)
T ss_pred CCH-------HHHHHHHHCCCCCEEE-----ECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC-----CCHHHHHH--
T ss_conf 737-------9999999759998999-----5589999999727545254319999896775125-----70999999--
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 999999988279199977
Q gi|254780332|r 374 MALKALAKELNIPIIALS 391 (504)
Q Consensus 374 ~~lK~lA~e~~ipvi~ls 391 (504)
T Consensus 153 --~~~~~-~~~~~~i~lS 167 (201)
T smart00487 153 --LLKLL-PKNVQLLLLS 167 (201)
T ss_pred --HHHHC-CCCCCEEEEC
T ss_conf --99967-9999789992