RPSBLAST alignment for GI: 254780332 and conserved domain: TIGR00665
>gnl|CDD|161985 TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. Length = 434
Score = 602 bits (1555), Expect = e-173
Identities = 220/469 (46%), Positives = 297/469 (63%), Gaps = 37/469 (7%)
Query: 24 PNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTV 83
P+NIEAEQA+LGAIL++NEA V++ LKP F+ HQ IF+ + L G+ + VTV
Sbjct: 3 PHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHQLIFQAILDLYEKGEPIDLVTV 62
Query: 84 KTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAY 143
K L L E+ YLA LA S N E Y I+ A+ R LI G E+V AY
Sbjct: 63 KEELEKDGKLEEVGGLAYLAELADNVPSAANIEYYAEIVKEKAILRRLIEAGTEIVELAY 122
Query: 144 EASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVS 203
+ D ++EAE+K+F +AE+ R GGF + + + ++ + + R G + GV
Sbjct: 123 DPEGD--VEELLDEAEQKIFEIAES-RTSGGFKSIKEILKDTVEEIEELYERGGGITGVP 179
Query: 204 TGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGG 263
TG LDK GLQ SDLII+A RP MGKT+ A NIA N A G
Sbjct: 180 TGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA--------------IKEGK 225
Query: 264 IVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT 323
V F+SLEMS+EQLA R++S ++ V S K+R G+L+ D+EK+ + + + + PLYID T
Sbjct: 226 PVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDT 285
Query: 324 GGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKEL 383
G+++++L +ARRLKR+ GL L+++DY+QLM+ S + ENR E++ I+ +LKALAKEL
Sbjct: 286 PGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR-SENRQQEVSEISRSLKALAKEL 344
Query: 384 NIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDD 443
N+P+IALSQLSR VE R++KRPQLSDLRESGSIEQDAD+V+F+ RDEYY N + +
Sbjct: 345 NVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYY--NPDSED--- 399
Query: 444 ILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSD 492
KGIA+IIIAKQR+GPTGTV LAFQ E+TRF L+
Sbjct: 400 --------------KGIAEIIIAKQRNGPTGTVKLAFQGEYTRFENLAR 434