BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780332|ref|YP_003064745.1| replicative DNA helicase
[Candidatus Liberibacter asiaticus str. psy62]
(504 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MINTAQDIILSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAI 60
MINTAQDIILSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAI
Sbjct: 1 MINTAQDIILSIPKEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAI 60
Query: 61 HQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGR 120
HQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGR
Sbjct: 61 HQKIFEIMGKLVHMGKTANPVTVKTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGR 120
Query: 121 IIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180
IIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD
Sbjct: 121 IIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRYDGGFHTFSD 180
Query: 181 AMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240
AMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA
Sbjct: 181 AMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240
Query: 241 YNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300
YNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR
Sbjct: 241 YNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300
Query: 301 PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360
PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK
Sbjct: 301 PDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKK 360
Query: 361 IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420
IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA
Sbjct: 361 IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDA 420
Query: 421 DVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480
DVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF
Sbjct: 421 DVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480
Query: 481 QAEFTRFSALSDSSYQTGEHFDSA 504
QAEFTRFSALSDSSYQTGEHFDSA
Sbjct: 481 QAEFTRFSALSDSSYQTGEHFDSA 504
>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 266
Score = 75.9 bits (185), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 164 HLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLII 223
HL +N + ++A T A+ A Q ++G + G+Q++D MGG+Q +LI+
Sbjct: 88 HLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELIL 146
Query: 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283
I RP MGKT+ A + A ++A ++G V F+SLEM E+L R +S
Sbjct: 147 IGARPSMGKTTFALSTALHMA---------------MSGHGVAFFSLEMDREKLGARALS 191
Query: 284 E-----QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID 321
+ +P + RGE+ + Y + +Q PL ID
Sbjct: 192 NLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIID 234
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 32.0 bits (71), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 202 VSTGIQTLDKQMGG-LQRSDLIIIAGRPGMGKTSLATNIAYNVA 244
+ T I LD+ GG R +I++ G PG+GK++L A ++A
Sbjct: 72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA 115
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 206 IQTLDKQMGGLQRSDLIII-AGRPGMGKTSLATNIAYNVADAY 247
I+ L QM ++ LI+ G PG+GKTSLA +IA Y
Sbjct: 352 IEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY 394
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKA 249
D ++ G PG+GKT+LA +A + +++
Sbjct: 55 DHVLFVGPPGLGKTTLAQVVARELGVNFRS 84
>gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 418
Score = 26.6 bits (57), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 120 RIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGRY 171
++ + L R+T + + +++ + LD S++I E ERK L EN Y
Sbjct: 37 KVTFSLFNRQTQLHLSDKIDESELRTQLDHVRSLRITEKERKW--LVENSFY 86
>gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 33
Score = 26.6 bits (57), Expect = 1.1, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 462 DIIIAKQRHGPTGTVTL 478
D I+AKQR+GP +V+L
Sbjct: 2 DFIVAKQRNGPIESVSL 18
>gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 69
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 17 SSQYRESPNN-----IEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIF 65
S +Y NN I EQ +LG++L+ + FL HF + IH ++F
Sbjct: 6 SKKYYSRNNNSIYYFIGLEQEILGSLLLKGN-LQPIISFLDAQHFIDPIHSEVF 58
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAY 247
++TGI+ +D + Q+ I + G G+GKT L + NVA A+
Sbjct: 133 LTTGIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAH 177
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 176 HTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMG-GLQ 217
H ++D TVA++MAG L +S +K+M GLQ
Sbjct: 428 HIYNDVFTVAVNMAG--------LPAISVPAALCEKKMPLGLQ 462
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 222 IIIAGRPGMGKTSLATNI 239
+II G PG GK+ TNI
Sbjct: 422 LIIEGPPGTGKSQTITNI 439
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 216 LQRSDLIIIAGRPGMGKTSLA 236
L R+ LI++ G G GK+SLA
Sbjct: 24 LPRNKLIVMTGVSGSGKSSLA 44
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 226 GRPGMGKTSLATNIAYNVADA 246
G PG+GKT++A A + D
Sbjct: 232 GDPGVGKTAIAEGFAKQIVDG 252
>gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
str. psy62]
Length = 141
Score = 24.3 bits (51), Expect = 5.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 78 ANPVTVKTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIG 135
AN T++ FL D+ + V Y + V IINT+D G + +G A R+L G
Sbjct: 84 ANTSTIR-FLVDEASMHIGDVDYY-----EKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNV 243
+S+ + L +G QRS +I P GKT L NIA+++
Sbjct: 160 ISSRVIDLIAPIGKGQRS---LIVAPPRTGKTILLQNIAHSI 198
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 23.9 bits (50), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADA 246
R +I++ G G+GKT++ ++ ++DA
Sbjct: 109 HRPHVILVVGVNGVGKTTVIGKLSKKMSDA 138
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 23.5 bits (49), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 199 LAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240
L +S + LDK + +++ + GR G GK++L IA
Sbjct: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 211 KQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240
K++GG + +++ G PG GKT LA +A
Sbjct: 174 KRLGG-RIPHGVLLVGPPGTGKTLLARAVA 202
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,432
Number of Sequences: 1233
Number of extensions: 11579
Number of successful extensions: 61
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 20
length of query: 504
length of database: 328,796
effective HSP length: 78
effective length of query: 426
effective length of database: 232,622
effective search space: 99096972
effective search space used: 99096972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)