HHsearch alignment for GI: 254780333 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=100.00 E-value=0 Score=831.37 Aligned_cols=354 Identities=29% Similarity=0.402 Sum_probs=330.1
Q ss_pred CCCCEEEEEEHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
Q ss_conf 888509998688999999999862-8997599999328665798999999998799899985599999999838985267
Q gi|254780333|r 3 SNEFLRLKIDLTALKNNWHSMNAL-SGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIF 81 (370)
Q Consensus 3 ~~~~~~leIdl~al~~Ni~~i~~~-~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Il 81 (370)
T Consensus 459 ~~h~T~lEIdL~Ai~~N~~~~r~~l~p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~Ea~~LR~~Gi~~pIl 538 (824)
T PRK11930 459 KVHETILEINLDAIVHNLNYYRSKLKPETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVADEGSELRKAGITLPIM 538 (824)
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEE
T ss_conf 55885899988999999999997479997699999634466349999999998499999992599999999749999879
Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCC-CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 30689746988887542101348998999988887-608-8776167612666765569889999998888631000124
Q gi|254780333|r 82 VLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCG-VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSL 159 (370)
Q Consensus 82 vl~~~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~-~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~g 159 (370)
T Consensus 539 vl~~~-~~~~~~~~~~~l~~~v~s~~~l~~l~~~~~~~~~~~~~vHlkiDTGM~RlGf~~~e~~~l~~~l~~~~~l~~~g 617 (824)
T PRK11930 539 VMNPE-LTSFKTIIDYKLEPEVYSFHLLDALIKEAEKKGLTNFPIHIKIDTGMHRLGFEPEDIPELIERLKKQSAVIVRS 617 (824)
T ss_pred EECCC-HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 93486-67799999808911078799999999999972999740899975999978599899999999998289985536
Q ss_pred HHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHC-----CCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 320124333346-6788999999999975434-----8860111641100477322202048735306787767556764
Q gi|254780333|r 160 IISHLACADDPS-SHVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQ 233 (370)
Q Consensus 160 i~THfa~ad~~~-~~~~~~Q~~~F~~~~~~~~-----~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~~~~~l~ 233 (370)
T Consensus 618 i~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSagi~~~p~~~~DmVR~Gi~LYG~~p~~-~~~~Lk 696 (824)
T PRK11930 618 VFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSGIERFPGAQYDMVRLGIGLYGVSASG-NQIKLR 696 (824)
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCEEECCCCCC-CCCCCE
T ss_conf 6745888899998579999999999999999871688762786078988659844698685283516869888-777966
Q ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEEC
Q ss_conf 10012368863267148983466565346776417971233002601023685433444323288699999995077004
Q gi|254780333|r 234 TVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKI 313 (370)
Q Consensus 234 pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv 313 (370)
T Consensus 697 pv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~~~~~IAtipiGYADG~~R~lsn~----------~g~Vli~G~~~pivGrI 766 (824)
T PRK11930 697 NVSTLKTTILQIRDIPKGDTVGYSRKGRVEKPSRIATIPIGYADGLNRHLGNG----------VGYVLVNGKKAPIVGNI 766 (824)
T ss_pred EEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCEEEEEEECCCCCCCCCCCCC----------CCEEEECCEEEEEEEEE
T ss_conf 60899999999998385698679995582899689999523102766225799----------83899999992256487
Q ss_pred CCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 25647996688778788878999788889989999817946042154888736445
Q gi|254780333|r 314 TMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTRYAKFY 369 (370)
Q Consensus 314 ~MD~~~vdvt~~~~~~~GD~V~l~G~~i~~~~~A~~~gti~yEil~~i~~RvpRiY 369 (370)
T Consensus 767 cMD~~mvDvt~i~-~~~GDeV~l~G~~i~~~elA~~~~TI~YEilt~i~~Rv~RvY 821 (824)
T PRK11930 767 CMDMCMIDVTDIH-ANEGDKVIIFGEELPVTELADALNTIPYEILTSISPRVKRVF 821 (824)
T ss_pred ECCEEEEECCCCC-CCCCCEEEEECCCCCHHHHHHHHCCCHHEEECCCCCCCCEEE
T ss_conf 3356999888998-999999999899999999999859910123237899887562