HHsearch alignment for GI: 254780333 and conserved domain: cd00430

>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00  E-value=0  Score=796.49  Aligned_cols=352  Identities=36%  Similarity=0.538  Sum_probs=335.2

Q ss_pred             EEEEEEHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             099986889999999998628-9975999993286657989999999987998999855999999998389852673068
Q gi|254780333|r    7 LRLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYG   85 (370)
Q Consensus         7 ~~leIdl~al~~Ni~~i~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~   85 (370)
T Consensus         2 ~~~eIdl~al~~N~~~lr~~~~~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Ilvl~~   81 (367)
T cd00430           2 TWAEIDLDALRHNLRVIRRLLGPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG   81 (367)
T ss_pred             EEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf             29998199999999999985689986999996554657789999999987979999854999999997299998599668


Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
Q ss_conf             9746988887542101348998999988887-608877616761266676556988999999888863100012432012
Q gi|254780333|r   86 IHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHL  164 (370)
Q Consensus        86 ~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~THf  164 (370)
T Consensus        82 ~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiDTGM~RlG~~~~e~~~~~~~l~~~~~l~~~gi~SHl  161 (367)
T cd00430          82 TPPEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDTGMGRLGFRPEEAEELLEALKALPGLELEGVFTHF  161 (367)
T ss_pred             CCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             99799999996180768786999999999988759982399998068875788979999999999868996188997402


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHC-----CCCHHHCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCC--CCCCCCCEEE
Q ss_conf             43333466788999999999975434-----8860111641100477322202048735306787767--5567641001
Q gi|254780333|r  165 ACADDPSSHVNSVQLERFRTLISHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKIN--KSHPMQTVVT  237 (370)
Q Consensus       165 a~ad~~~~~~~~~Q~~~F~~~~~~~~-----~~~~h~~nS~~~l~~p~~~~d~vR~Gi~lYG~~~~~~--~~~~l~pv~~  237 (370)
T Consensus       162 a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~~~~d~vRpGi~LYG~~p~~~~~~~~~Lkpv~~  241 (367)
T cd00430         162 ATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEAHFDMVRPGIALYGLYPSPEVKSPLGLKPVMS  241 (367)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCEEE
T ss_conf             35788770788999999999999998648997637601689777395003880601654426888734455668621079


Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCC
Q ss_conf             23688632671489834665653467764179712330026010236854334443232886999999950770042564
Q gi|254780333|r  238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM  317 (370)
Q Consensus       238 l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~  317 (370)
T Consensus       242 l~a~ii~ir~v~~G~~VGYg~~~~a~~~~~ia~v~iGYaDG~pr~~~~-----------~~~v~i~g~~~~ivGrvsMD~  310 (367)
T cd00430         242 LKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSN-----------KGEVLIRGKRAPIVGRVCMDQ  310 (367)
T ss_pred             EEEEEEEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC-----------CCEEEECCEEEEEEEEEECCE
T ss_conf             999999989718979234899403587834899711122564510268-----------868999999925633750554


Q ss_pred             EEEECCCCCCCCCCCEEEEECCC----CCHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             79966887787888789997888----89989999817946042154888736445
Q gi|254780333|r  318 TMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTNYDLLVRIGTRYAKFY  369 (370)
Q Consensus       318 ~~vdvt~~~~~~~GD~V~l~G~~----i~~~~~A~~~gti~yEil~~i~~RvpRiY  369 (370)
T Consensus       311 ~~vdvt~~~~~~~Gd~V~l~G~~~~~~~~~~~~A~~~~ti~yEilt~l~~R~~R~y  366 (367)
T cd00430         311 TMVDVTDIPDVKVGDEVVLFGRQGDEEITAEELAELAGTINYEILCRISKRVPRIY  366 (367)
T ss_pred             EEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCEE
T ss_conf             89988899889999999998189988779999999878972346327788888076