HHsearch alignment for GI: 254780333 and conserved domain: cd06810
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.67 E-value=9.9e-13 Score=102.12 Aligned_cols=308 Identities=16% Similarity=0.114 Sum_probs=187.0
Q ss_pred EEEEEHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 99986889999999998628-99759999932866579899999999879989998559999999983898526730689
Q gi|254780333|r 8 RLKIDLTALKNNWHSMNALS-GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI 86 (370)
Q Consensus 8 ~leIdl~al~~Ni~~i~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~~ 86 (370)
T Consensus 3 ~yv~d~~~l~~~~~~~~~~~~~~~~i~YAvKaN~----~~~vl~~l~~~g~-g~dvaS~~El~~al~~G~~~~~Ii~~gp 77 (368)
T cd06810 3 FYVYDLDIIRAHYAALKEALPSGVKLFYAVKANP----NPHVLRTLAEAGT-GFDVASKGELALALAAGVPPERIIFTGP 77 (368)
T ss_pred EEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCCHHHEEEECC
T ss_conf 9998699999999999975799978999965389----9999999998599-1897799999999985999441999455
Q ss_pred --CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH-CCCCCCCEEEECCC-------------CCCCCCCHHHHHHHHHHH
Q ss_conf --7469888875421-013489989999888876-08877616761266-------------676556988999999888
Q gi|254780333|r 87 --HPGQEKIIFDTNL-IPVISSVPQLTFYSKLMS-CGVSHPYALQVDTG-------------FNRLGLSLQEALDFTHNS 149 (370)
Q Consensus 87 --~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~~-~~~~~~vhlkiDTG-------------M~R~G~~~~e~~~~~~~~ 149 (370)
T Consensus 78 ~K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~ 157 (368)
T cd06810 78 AKSVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERA 157 (368)
T ss_pred CCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 45305699999759784555799999999999985699975999994487877521036888776799999999999999
Q ss_pred HHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHCCCCHHCC--CCCCCCHH------HCCCCCC
Q ss_conf 86310001243201243333466788999999999975434--88601116411004--77322202------0487353
Q gi|254780333|r 150 FNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGILL--GPNYHFQL------TRPGISL 219 (370)
Q Consensus 150 ~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~--~~~~h~~nS~~~l~--~p~~~~d~------vR~Gi~l 219 (370)
T Consensus 158 ~~~-~l~l~GlhfH~GS~~-~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~i~~~~~~ 235 (368)
T cd06810 158 KEL-DLRLVGLHFHVGSQI-LDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKK 235 (368)
T ss_pred HHC-CCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 865-996789999768776-886999999999999999998629985346437885777888998999999999999998
Q ss_pred C-CCCCCCC--CCC---CCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCC-CCCCCCCCC
Q ss_conf 0-6787767--556---76410012368863267148983466565346776417971233002601023-685433444
Q gi|254780333|r 220 Y-GGTDKIN--KSH---PMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTL-SGLDSEHSP 292 (370)
Q Consensus 220 Y-G~~~~~~--~~~---~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~l-s~~~~~~~~ 292 (370)
T Consensus 236 ~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~---------------~~~~~~vd~g~~~~~~~~~~~~~~--~~~ 298 (368)
T cd06810 236 YFPNDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNG---------------GRFFAVVDGGMNHSFRPALAYDAY--HPI 298 (368)
T ss_pred HHCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECC---------------CCEEEEECCCCCCCCCCHHHCCCC--CCE
T ss_conf 723478968998664456524361999999999759---------------971899766434556623216884--642
Q ss_pred CCC-CCCEEEECCEEEEEEEECCCCC-EEEECCCCCCCCCCCEEEEECCC
Q ss_conf 323-2886999999950770042564-79966887787888789997888
Q gi|254780333|r 293 SVF-LGGKGFIKGYMVPILGKITMDM-TMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 293 ~~~-~~~~vli~G~~~pivGrv~MD~-~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 299 ~~~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~G 347 (368)
T cd06810 299 TPLKAPGP-DEPLVPATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMG 347 (368)
T ss_pred EECCCCCC-CCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCC
T ss_conf 86178888-89866999975588868799568857889999999776947