>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.

Probab=100.00 E-value=0 Score=392.28 Aligned_cols=311 Identities=26% Similarity=0.253 Sum_probs=256.6 Q ss_pred CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEE Q ss_conf 50999868899999999986289--9759999932866579899999999879989998559999999983898526730 Q gi|254780333|r 6 FLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 (370) Q Consensus 6 ~~~leIdl~al~~Ni~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl 83 (370) T Consensus 1 ~PrleIdL~~l~~N~~~l~~~~~~~gi~~~~VvKa~a---G~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi~~pillL 77 (353) T cd06815 1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVC---GDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLL 77 (353) T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCC---CCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEE T ss_conf 9769983999999999999976054988999984468---9599999999879999997028999999975999978997 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHC Q ss_conf 689746988887542101348998999988887-6088776167612666765569889999998888631000124320 Q gi|254780333|r 84 YGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIIS 162 (370) Q Consensus 84 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~~~e~~~~~~~~~~~~~~~i~gi~T 162 (370) T Consensus 78 ~~p~~se~~~vv~~~dis~~se~~~i~aLs~~A~~~gk~~~V~l~VDtGm~R~Gv~ped~~~~~~~I~~lp~i~l~GI~T 157 (353) T cd06815 78 RIPMLSEVEDVVKYADISLNSELETIKALSEEAKKQGKIHKIILMVDLGDLREGVLPEDLLDFVEEILKLPGIELVGIGT 157 (353) T ss_pred CCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 26888899999873304202879999999999998698478999996899957889899999999986599959999888 Q ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHHHHCCC---CHHHCCCCHHCCCCCC----CCHHHCCC-CCCCCCCCCCCCCCC-- Q ss_conf 1243333466-78899999999997543488---6011164110047732----22020487-353067877675567-- Q gi|254780333|r 163 HLACADDPSS-HVNSVQLERFRTLISHYKGI---EASLASSSGILLGPNY----HFQLTRPG-ISLYGGTDKINKSHP-- 231 (370) Q Consensus 163 Hfa~ad~~~~-~~~~~Q~~~F~~~~~~~~~~---~~h~~nS~~~l~~p~~----~~d~vR~G-i~lYG~~~~~~~~~~-- 231 (370) T Consensus 158 hfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i~~G~~~~~~~~i~~l 237 (353) T cd06815 158 NLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAILLGRETTYNEPIPGL 237 (353) T ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC T ss_conf 76357888999999999999999999984998766970537768988558985432103333158961257777643000 Q ss_pred CCCEEEEEEEEEEEEE---ECCCC----CCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEECC Q ss_conf 6410012368863267---14898----3466565346776417971233002601023685433444323288699999 Q gi|254780333|r 232 MQTVVTAEARIILIRK---ALAGE----LVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKG 304 (370) Q Consensus 232 l~pv~~l~s~i~~ir~---l~~G~----~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~~~~~~~~~~vli~G 304 (370) T Consensus 238 ~~d~~~L~aeViEik~kps~p~g~~g~~afG~~~~f~d~g~~~rAIl~iG~~D~~~~~l~p~~---------------~~ 302 (353) T cd06815 238 YQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDPDGLTPVD---------------NG 302 (353) T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCHHHCEECC---------------CC T ss_conf 464189999999950467778763122577875224268841799997665557775634779---------------98 Q ss_pred EEEEEEEECCCCCEEEECCCCC-CCCCCCEEEEE Q ss_conf 9950770042564799668877-87888789997 Q gi|254780333|r 305 YMVPILGKITMDMTMFDITDSL-SIEVGDYIQIF 337 (370) Q Consensus 305 ~~~pivGrv~MD~~~vdvt~~~-~~~~GD~V~l~ 337 (370) T Consensus 303 --i~IlGa-sSDhlivDit~~~~~~kvGD~i~F~ 333 (353) T cd06815 303 --IEILGA-SSDHLILDITDSDRDYKVGDEIRFN 333 (353) T ss_pred --EEEEEC-CCCEEEEECCCCCCCCCCCCEEEEE T ss_conf --099822-5754899776776888889889996

HHsearch alignment for GI: 254780333 and conserved domain: cd06815