HHsearch alignment for GI: 254780333 and conserved domain: cd06818
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.92 E-value=2.1e-21 Score=158.25 Aligned_cols=303 Identities=15% Similarity=0.126 Sum_probs=200.4
Q ss_pred CEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEE
Q ss_conf 5099986889999999998628--99759999932866579899999999879989998559999999983898526730
Q gi|254780333|r 6 FLRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVL 83 (370)
Q Consensus 6 ~~~leIdl~al~~Ni~~i~~~~--~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl 83 (370)
T Consensus 3 TPaLvvD~~~le~Ni~~M~~~~~~~gv~lRPH~KT----HKs~eia~~Q~~~Ga~git~at~~EAe~~~~~G~~-dilia 77 (382)
T cd06818 3 LPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKT----TMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR-RVLLA 77 (382)
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCC----CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC-CEEEE
T ss_conf 97799709999999999999998669835204010----04799999999689983896779999999976986-47994
Q ss_pred CCC-CHHHHHH---HHH----HHHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCC-HHHHHHHHHHHHHHH
Q ss_conf 689-7469888---875----42101348998999988887-6088776167612666765569-889999998888631
Q gi|254780333|r 84 YGI-HPGQEKI---IFD----TNLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKK 153 (370)
Q Consensus 84 ~~~-~~~~~~~---~~~----~~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~-~~e~~~~~~~~~~~~ 153 (370)
T Consensus 78 ~~iv~~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G~~R~Gv~~~~~a~~l~~~i~~~~ 157 (382)
T cd06818 78 NQLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVPGGRTGVRTEAEALALADAIAASP 157 (382)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 26579889999999985089978999962999999999999855994589999788988789998699999999997299
Q ss_pred CCCHHHHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHHC--C---CCHHHCCCCHHCCC------------CCCCCHH
Q ss_conf 0001243201243333466788999----999999975434--8---86011164110047------------7322202
Q gi|254780333|r 154 LGQLSLIISHLACADDPSSHVNSVQ----LERFRTLISHYK--G---IEASLASSSGILLG------------PNYHFQL 212 (370)
Q Consensus 154 ~~~i~gi~THfa~ad~~~~~~~~~Q----~~~F~~~~~~~~--~---~~~h~~nS~~~l~~------------p~~~~d~ 212 (370)
T Consensus 158 ~L~~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs~GgT~~f~~~~~~~~~~~~~~~~~~e 237 (382)
T cd06818 158 ALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAWFDLVAEALAALALDGPVTLV 237 (382)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 96594688546756678866899999999999999999999706788897089982895543334554144568773279
Q ss_pred HCCCCCCCCC---CC----C------CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC----
Q ss_conf 0487353067---87----7------67556764100123688632671489834665653467764179712330----
Q gi|254780333|r 213 TRPGISLYGG---TD----K------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGY---- 275 (370)
Q Consensus 213 vR~Gi~lYG~---~~----~------~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGY---- 275 (370)
T Consensus 238 lrpG~Yvf~D~g~Y~~~~~~~~~~~~~~~~~~f~~Al~VlttViS~p--~~~----------------~ailDaG~K~ls 299 (382)
T cd06818 238 LRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSRP--EPG----------------LAILGMGKRDVA 299 (382)
T ss_pred ECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCC--CCC----------------EEEECCCCCCCC
T ss_conf 86716997452787643244430366553322212159999996424--699----------------699888651200
Q ss_pred -CCCEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf -02601023685433444323288699999995077004256479966887787888789997888
Q gi|254780333|r 276 -ADGYPLTLSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 276 -aDG~pr~ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 300 ~D~g~P~~~~~~---------~~g~~~~~~~~~~~v~~~seEHgil~~~~~~~l~vGd~v~iiP~H 356 (382)
T cd06818 300 FDAGLPVPLRVF---------RPGGGVVRLPDGWEVTALNDQHAFLRLPPESPLAVGDVIAFGISH 356 (382)
T ss_pred CCCCCCCCCCCC---------CCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 246998653201---------588532358997078011363247877998999997789997996