HHsearch alignment for GI: 254780333 and conserved domain: cd06828
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.67 E-value=6.7e-13 Score=103.25 Aligned_cols=307 Identities=16% Similarity=0.113 Sum_probs=184.5
Q ss_pred EEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 099986889999999998628--997599999328665798999999998799899985599999999838985267306
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALS--GNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLY 84 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~--~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~ 84 (370)
T Consensus 4 P~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~----~~~il~~l~~~g~-g~dvaS~~El~~al~~G~~~~~Ii~~ 78 (373)
T cd06828 4 PLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANS----NLAILKLLAEEGL-GADVVSGGELYRALKAGFPPERIVFT 78 (373)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCCHHHEEEC
T ss_conf 889988999999999999860458978999862279----9999999998599-18997999999999849995459981
Q ss_pred CC--CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH-CCCCCCCEEEEC------------CCC--CCCCCCHHHHHHHH
Q ss_conf 89--7469888875421-013489989999888876-088776167612------------666--76556988999999
Q gi|254780333|r 85 GI--HPGQEKIIFDTNL-IPVISSVPQLTFYSKLMS-CGVSHPYALQVD------------TGF--NRLGLSLQEALDFT 146 (370)
Q Consensus 85 ~~--~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~~-~~~~~~vhlkiD------------TGM--~R~G~~~~e~~~~~ 146 (370)
T Consensus 79 gp~K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~ 158 (373)
T cd06828 79 GNGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAY 158 (373)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHH
T ss_conf 76411378999997398567629999999999862761998549999888988777762313775321389999999999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHCCCCHHCC--C-C-CCCCH------HHC
Q ss_conf 88886310001243201243333466788999999999975434--88601116411004--7-7-32220------204
Q gi|254780333|r 147 HNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGILL--G-P-NYHFQ------LTR 214 (370)
Q Consensus 147 ~~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~--~~~~h~~nS~~~l~--~-p-~~~~d------~vR 214 (370)
T Consensus 159 ~~~~~~~~l~~~GlhfHvGS~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~ 237 (373)
T cd06828 159 RRAKELPGLKLVGLHCHIGSQ-ILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIA 237 (373)
T ss_pred HHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999857998468878864766-6887999999999999999999749986577436874645788889989999999999
Q ss_pred CCCCCCCC-CC------CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECC-CCCC
Q ss_conf 87353067-87------7675567641001236886326714898346656534677641797123300260102-3685
Q gi|254780333|r 215 PGISLYGG-TD------KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLT-LSGL 286 (370)
Q Consensus 215 ~Gi~lYG~-~~------~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~-ls~~ 286 (370)
T Consensus 238 ~~l~~~~~~~~~~~li~EPGR~-lva~ag~lvt~V~~~k~~~---------------~~~~~~~D~g~~~~~-rP~ly~- 299 (373)
T cd06828 238 EALKELCEGGPDLKLIIEPGRY-IVANAGVLLTRVGYVKETG---------------GKTFVGVDAGMNDLI-RPALYG- 299 (373)
T ss_pred HHHHHHHCCCCCCEEEEECCHH-HHCCCCEEEEEEEEEEECC---------------CEEEEEECCCCCCCC-CHHHCC-
T ss_conf 9999974248986799904268-6506756999999999649---------------808999778634455-656517-
Q ss_pred CCCCCCCCCCCCEEEECCEEEEEEEECCCC--CEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 433444323288699999995077004256--479966887787888789997888
Q gi|254780333|r 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 287 ~~~~~~~~~~~~~vli~G~~~pivGrv~MD--~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 300 -~~~~i~~~~~~~-~~~~~~~~v~Gp~C~s~D~l~~~~~-lp~l~~GD~l~~~~~G 352 (373)
T cd06828 300 -AYHEIVPVNKPG-EGETEKVDVVGPICESGDVFAKDRE-LPEVEEGDLLAIHDAG 352 (373)
T ss_pred -CCCCEEECCCCC-CCCCEEEEEECCCCCCCCEECCCCC-CCCCCCCCEEEECCCC
T ss_conf -756117648888-8982489998369898878884642-7899999999992986