HHsearch alignment for GI: 254780333 and conserved domain: cd06839
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.66 E-value=1.3e-12 Score=101.46 Aligned_cols=307 Identities=12% Similarity=0.078 Sum_probs=181.7
Q ss_pred EEEEEEHHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-CEEEEC
Q ss_conf 0999868899999999986289-97599999328665798999999998799899985599999999838985-267306
Q gi|254780333|r 7 LRLKIDLTALKNNWHSMNALSG-NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-RIFVLY 84 (370)
Q Consensus 7 ~~leIdl~al~~Ni~~i~~~~~-~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~-~Ilvl~ 84 (370)
T Consensus 8 P~yv~d~~~i~~~~~~l~~alp~~~~i~YAvKaN----~~~~vl~~l~~~G~-g~DvaS~~El~~al~~G~~~~~Ii~~g 82 (382)
T cd06839 8 PFYVYDRDRVRERYAALRAALPPAIEIYYSLKAN----PNPALVAHLRQLGD-GAEVASAGELALALEAGVPPEKILFAG 82 (382)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCC----CCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8899879999999999998589997599997048----99999999997499-099989999999998599953107616
Q ss_pred CC-CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH-CCCCCCCEEEECCCC-------------CCCCCCHHHHHHHHHH
Q ss_conf 89-7469888875421-013489989999888876-088776167612666-------------7655698899999988
Q gi|254780333|r 85 GI-HPGQEKIIFDTNL-IPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGF-------------NRLGLSLQEALDFTHN 148 (370)
Q Consensus 85 ~~-~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~~-~~~~~~vhlkiDTGM-------------~R~G~~~~e~~~~~~~ 148 (370)
T Consensus 83 p~K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~skFGi~~~~~~~~~~~ 162 (382)
T cd06839 83 PGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLAR 162 (382)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 87888999999983995764386799999999998639974699998158877877614478854458999999999999
Q ss_pred HHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHH----HHHHHHHHCCCCHHHCCCCHHC---CCC-CCCCH------HHC
Q ss_conf 886310001243201243333466788999999----9999754348860111641100---477-32220------204
Q gi|254780333|r 149 SFNKKLGQLSLIISHLACADDPSSHVNSVQLER----FRTLISHYKGIEASLASSSGIL---LGP-NYHFQ------LTR 214 (370)
Q Consensus 149 ~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~----F~~~~~~~~~~~~h~~nS~~~l---~~p-~~~~d------~vR 214 (370)
T Consensus 163 ~~~~~~l~~~Glh~H~GS~~~-~~~~~~~a~~~~~~~~~~~~~~~-g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~i~ 240 (382)
T cd06839 163 IAALPNLRFVGLHIYPGTQIL-DADALIEAFRQTLALALRLAEEL-GLPLEFLDLGGGFGIPYFPGETPLDLEALGAALA 240 (382)
T ss_pred HHHCCCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 984689837888983577778-97999999999999999989865-9885177505873767889899989999999999
Q ss_pred CCCCCCCCC-C------CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCC
Q ss_conf 873530678-7------767556764100123688632671489834665653467764179712330026010236854
Q gi|254780333|r 215 PGISLYGGT-D------KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD 287 (370)
Q Consensus 215 ~Gi~lYG~~-~------~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~ 287 (370)
T Consensus 241 ~~~~~~~~~~~~~~l~~EPGR-~lva~ag~lv~~V~~~K~~~---------------~~~~~~~D~g~~~~~~~~~~~~~ 304 (382)
T cd06839 241 ALLAELGDRLPGTRVVLELGR-YLVGEAGVYVTRVLDRKVSR---------------GETFLVTDGGMHHHLAASGNFGQ 304 (382)
T ss_pred HHHHHHHHCCCCCEEEEECCC-EEECCCEEEEEEEEEEEECC---------------CCEEEEEECCCCCCCHHHCCHHH
T ss_conf 999986420589689991350-03215717999999998359---------------95799990753344123223256
Q ss_pred CCC--CCCC---CCCCEEEECCEEEEEEEECCCC--CEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 334--4432---3288699999995077004256--479966887787888789997888
Q gi|254780333|r 288 SEH--SPSV---FLGGKGFIKGYMVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 288 ~~~--~~~~---~~~~~vli~G~~~pivGrv~MD--~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 305 ~~~~~~p~~~~~~~~~~---~~~~~~v~Gp~C~s~D~l~~~~-~lp~l~~GD~L~i~~~G 360 (382)
T cd06839 305 VLRRNYPLAILNRMGGE---ERETVTVVGPLCTPLDLLGRNV-ELPPLEPGDLVAVLQSG 360 (382)
T ss_pred HHCCCCCEEECCCCCCC---CEEEEEEECCCCCCCCEECCCC-CCCCCCCCCEEEECCCC
T ss_conf 53147607824788889---8169999898888877987054-67889999999995986