HHsearch alignment for GI: 254780333 and conserved domain: cd06843
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.73 E-value=8e-15 Score=115.66 Aligned_cols=313 Identities=14% Similarity=0.114 Sum_probs=187.7
Q ss_pred EEEEHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEECCC-
Q ss_conf 99868899999999986-2899759999932866579899999999879989998559999999983898526730689-
Q gi|254780333|r 9 LKIDLTALKNNWHSMNA-LSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGI- 86 (370)
Q Consensus 9 leIdl~al~~Ni~~i~~-~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilvl~~~- 86 (370)
T Consensus 5 YVyd~~~l~~~~~~l~~a~p~~~~~~YAvKaN~----~~~il~~l~~~G~-g~DvaS~~El~~~~~~~~~~~Iif~gp~K 79 (377)
T cd06843 5 YVYDLAALRAHARALRASLPPGCELFYAIKANS----DPPILRALAPHVD-GFEVASGGEIAHVRAAVPDAPLIFGGPGK 79 (377)
T ss_pred EEECHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 996099999999999985799984999960388----9999999997699-68982999999998539996479889999
Q ss_pred CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHH-CCCCCCCEEEECCCC--------------CCCCCCHHHHHHHHHHHH
Q ss_conf 7469888875421-013489989999888876-088776167612666--------------765569889999998888
Q gi|254780333|r 87 HPGQEKIIFDTNL-IPVISSVPQLTFYSKLMS-CGVSHPYALQVDTGF--------------NRLGLSLQEALDFTHNSF 150 (370)
Q Consensus 87 ~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~~-~~~~~~vhlkiDTGM--------------~R~G~~~~e~~~~~~~~~ 150 (370)
T Consensus 80 ~~~~l~~a~~~gv~~i~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~ 159 (377)
T cd06843 80 TDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR 159 (377)
T ss_pred CHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999987998899889999999998788619962899999678777775542058888778989899999999998
Q ss_pred HHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCHHHCCCCHHC----CCCCCCCHHHCCCCC-----
Q ss_conf 6310001243201243333466788999999999975434---8860111641100----477322202048735-----
Q gi|254780333|r 151 NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYK---GIEASLASSSGIL----LGPNYHFQLTRPGIS----- 218 (370)
Q Consensus 151 ~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~---~~~~h~~nS~~~l----~~p~~~~d~vR~Gi~----- 218 (370)
T Consensus 160 ~~~~l~~~Glh~HvGS~-~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDiGGGf~v~y~~~~~~~d~~~~~~~i~~~~ 238 (377)
T cd06843 160 DLPNIRLRGFHFHLMSH-NLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLL 238 (377)
T ss_pred HCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 28998567777733678-88979999999999999999999719973146505862446788888889899999999999
Q ss_pred -CCCCCC----CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC-CCCCCEEEEECCCCCCCEECCCCCCCCCCCC
Q ss_conf -306787----7675567641001236886326714898346656534-6776417971233002601023685433444
Q gi|254780333|r 219 -LYGGTD----KINKSHPMQTVVTAEARIILIRKALAGELVSYGGQKK-LTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 (370)
Q Consensus 219 -lYG~~~----~~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~-~~~~~~iavipiGYaDG~pr~ls~~~~~~~~ 292 (370)
T Consensus 239 ~~~~~~~~l~~EPGR~l-va~ag~ll~~V~~vK~~~~-------~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 310 (377)
T cd06843 239 AEYEPGLTLRFECGRYI-SAYCGYYVTEVLDLKRSHG-------EWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYP 310 (377)
T ss_pred HHCCCCCEEEECCCCEE-EECCEEEEEEEEEEEECCC-------CEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCC
T ss_conf 85299877997575278-7143499999999975199-------379998155344424134136684488753445555
Q ss_pred CCCCCCEEEECCEEEEEEEECCC--CCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 32328869999999507700425--6479966887787888789997888
Q gi|254780333|r 293 SVFLGGKGFIKGYMVPILGKITM--DMTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 293 ~~~~~~~vli~G~~~pivGrv~M--D~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
T Consensus 311 ~----~~~~~~~~~~~v~Gp~C~s~D~l~~~~~-lp~l~~GD~L~i~~~G 355 (377)
T cd06843 311 W----PRPSVRDTPVTLVGQLCTPKDVLARDVP-VDRLRAGDLVVFPLAG 355 (377)
T ss_pred C----CCCCCCCCEEEEECCCCCCCCEECCCCC-CCCCCCCCEEEECCCC
T ss_conf 5----7766677569999169899888873668-7889999999995887