HHsearch results for GI: 254780333 and protein with PDBid: 1knw_A
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.23 E-value=4e-09 Score=77.40 Aligned_cols=302 Identities=13% Similarity=0.091 Sum_probs=163.6
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-----CEEE
Q ss_conf 99986889999999998628997599999328665798999999998799899985599999999838985-----2673
Q gi|254780333|r 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-----RIFV 82 (370)
Q Consensus 8 ~leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~-----~Ilv 82 (370)
--.+|++.|+.|++.+++. .++.--+|||. ...+.+.+.+.|+ +|-|+|..|-...+++|+.. .|..
T Consensus 28 ~yv~d~~~l~~~~~~l~~~---~~v~YAvKaN~----~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~~~~~~~~Ii~ 99 (425)
T 1knw_A 28 VWVYDAQIIRRQIAALKQF---DVVRFAQKACS----NIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDIVF 99 (425)
T ss_dssp EEEEEHHHHHHHHHTTTTS---SEEEEEGGGCC----CHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred EEEEEHHHHHHHHHHHHCC---CEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 8998799999999985166---98999951178----9999999998499-78998999999999869996677342797
Q ss_pred ECCC-CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEC------------CCC--CCCCCCHHHHHHHHH
Q ss_conf 0689-7469888875421013489989999888876088776167612------------666--765569889999998
Q gi|254780333|r 83 LYGI-HPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVD------------TGF--NRLGLSLQEALDFTH 147 (370)
Q Consensus 83 l~~~-~~~~~~~~~~~~i~~~i~s~~~l~~l~~~~~~~~~~~vhlkiD------------TGM--~R~G~~~~e~~~~~~ 147 (370)
-++. ..++++.+.+.++...+.|.++++.+.++.+ ..++.+-++ +|. .+.|+..++...+..
T Consensus 100 ~gp~k~~~~l~~a~~~g~~i~~ds~~el~~l~~~~~---~~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~ 176 (425)
T 1knw_A 100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSP---GHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALD 176 (425)
T ss_dssp EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHST---TCEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC---CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 478556999976654053001025889999975045---45311003788665546555566666655403133247789
Q ss_pred HHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCC----CCCH------HHCCCC
Q ss_conf 888631000124320124333346678899999999997543488601116411004773----2220------204873
Q gi|254780333|r 148 NSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASSSGILLGPN----YHFQ------LTRPGI 217 (370)
Q Consensus 148 ~~~~~~~~~i~gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~h~~nS~~~l~~p~----~~~d------~vR~Gi 217 (370)
. ....++++.|+..|..+... ..........+.+....+ +...+.-|-+|-+-.+- ..++ .++.-.
T Consensus 177 ~-~~~~~l~~~Glh~H~gS~~~--~~~~~~~~~~~~~~~~~~-g~~l~~ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (425)
T 1knw_A 177 V-IQRHHLQLVGIHMHIGSGVD--YAHLEQVCGAMVRQVIEF-GQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAR 252 (425)
T ss_dssp H-HHHTTCEEEEEECCCCCTTC--HHHHHHHHHHHHHHHHHH-TCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHH
T ss_pred H-HHHCCCEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9-87559258777874055443--578899987764443204-6122234433663647788877875898877788999
Q ss_pred C----CCCCCCCCCCCCC---CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCC
Q ss_conf 5----3067877675567---64100123688632671489834665653467764179712330026010236854334
Q gi|254780333|r 218 S----LYGGTDKINKSHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEH 290 (370)
Q Consensus 218 ~----lYG~~~~~~~~~~---l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~~~~ 290 (370)
. .+|..+..-.+.+ ..++..+-++|+.+|... +.+.+++-.|+.+-..-.+.+... .
T Consensus 253 ~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~---------------~~~~~~~d~g~~~~~~~~~~~~~~-~ 316 (425)
T 1knw_A 253 EQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMG---------------SRHFVLVDAGFNDLMRPAMYGSYH-H 316 (425)
T ss_dssp HHHHHHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEET---------------TEEEEEESCCTTTSCHHHHHCCCC-C
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECC---------------CEEEEEECCCCCCCCCHHHCCCCC-C
T ss_conf 998652355249985377540036027999998997259---------------736899775015676766628634-1
Q ss_pred CCCCCCCCEEEECC--EEEEEEEECCCCC--EEEEC------CCCCCCCCCCEEEEECCC
Q ss_conf 44323288699999--9950770042564--79966------887787888789997888
Q gi|254780333|r 291 SPSVFLGGKGFIKG--YMVPILGKITMDM--TMFDI------TDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 291 ~~~~~~~~~vli~G--~~~pivGrv~MD~--~~vdv------t~~~~~~~GD~V~l~G~~ 340 (370)
.+.....++..-.+ ..+-|.|..|+.. +.-+. ...|++++||.+.+..-.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~G 376 (425)
T 1knw_A 317 ISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTG 376 (425)
T ss_dssp EEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCS
T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 256415665444689617999806978981785466665333547889989999997976