HHsearch results for GI: 254780333 and protein with PDBid: 2nva_A
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.40 E-value=2.7e-10 Score=84.95 Aligned_cols=305 Identities=11% Similarity=0.017 Sum_probs=169.1
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC-CEEEECCC-
Q ss_conf 9986889999999998628997599999328665798999999998799899985599999999838985-26730689-
Q gi|254780333|r 9 LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA-RIFVLYGI- 86 (370)
Q Consensus 9 leIdl~al~~Ni~~i~~~~~~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~-~Ilvl~~~- 86 (370)
-..|++.|++|++.+|+.-|++++.--+|||. ...+.+.+.+.|+ +|-|+|..|-...+++|++. +|..-++.
T Consensus 20 yv~d~~~i~~~~~~~~~~~p~v~~~YAvKaN~----~~~vl~~l~~~G~-G~dv~S~~El~~al~~G~~~~~Ii~~g~~K 94 (372)
T 2nva_A 20 YVSSPKIVEDLIDQWTILFPRVTPHYAVKCNN----DEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRIIFAHTMK 94 (372)
T ss_dssp EEECHHHHHHHHHHHHHHCTTEEEEEEGGGCC----CHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGEEECCSCC
T ss_pred EEEEHHHHHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCCHHHEEECCCCC
T ss_conf 99729999999999998788986988851189----8999999998498-499969999999998597912499948989
Q ss_pred CHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC------CCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 7469888875421-01348998999988887608877616761266------6765569889999998888631000124
Q gi|254780333|r 87 HPGQEKIIFDTNL-IPVISSVPQLTFYSKLMSCGVSHPYALQVDTG------FNRLGLSLQEALDFTHNSFNKKLGQLSL 159 (370)
Q Consensus 87 ~~~~~~~~~~~~i-~~~i~s~~~l~~l~~~~~~~~~~~vhlkiDTG------M~R~G~~~~e~~~~~~~~~~~~~~~i~g 159 (370)
.+++++.++++++ +..+.+.++++.++++... ....+.+..+.. .++.|+...++.+..... ....+++.|
T Consensus 95 ~~~el~~ai~~gv~i~~~ds~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~a-~~~~l~~~G 172 (372)
T 2nva_A 95 TIDDLIFAKDQGVDIATFDSSFELDKIHTYHPN-CKMILRIRCDDPNATVQLGNKFGANEDEIRHLLEYA-KQLDIEVIG 172 (372)
T ss_dssp CHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTT-CEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHHHH-HHTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEE
T ss_conf 999999999859970026539999999875513-332101101567554456887777717779999999-856981889
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCHHHCCCCHHCCCC----CCCC---HHHCC-CCCCCCCCC-CCCC
Q ss_conf 3201243333466788999999999975434--8860111641100477----3222---02048-735306787-7675
Q gi|254780333|r 160 IISHLACADDPSSHVNSVQLERFRTLISHYK--GIEASLASSSGILLGP----NYHF---QLTRP-GISLYGGTD-KINK 228 (370)
Q Consensus 160 i~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~--~~~~h~~nS~~~l~~p----~~~~---d~vR~-Gi~lYG~~~-~~~~ 228 (370)
+-.|+.+... +.+.-..++++..++...++ +.....-|=+|=+..+ +... ++.+. -..+++... ..--
T Consensus 173 lH~H~gS~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdiGGGf~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (372)
T 2nva_A 173 ISFHVGSGSR-NPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTVTIVA 251 (372)
T ss_dssp EECCCCBSBC-CHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCCTTCEEEE
T ss_pred EEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 9986687658-768999999987777766675079742899778867388887777459999876543024655533313
Q ss_pred CCC---CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCC-CCCCCC-CCCCCEEEEC
Q ss_conf 567---64100123688632671489834665653467764179712330026010236854-334443-2328869999
Q gi|254780333|r 229 SHP---MQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLD-SEHSPS-VFLGGKGFIK 303 (370)
Q Consensus 229 ~~~---l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~~~~~~iavipiGYaDG~pr~ls~~~-~~~~~~-~~~~~~vli~ 303 (370)
+.+ ..++..+-++|+.+|.-..+. ++.+....|+.-.+....+.. ..+... ....++
T Consensus 252 EPGR~lva~ag~llt~V~~~k~~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 313 (372)
T 2nva_A 252 EPGRFFAEHYSVLATQVIGKRVRDGLY--------------EYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEE---- 313 (372)
T ss_dssp CCSHHHHGGGEEEEEEEEEEEEETTEE--------------EEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCC----
T ss_pred CCCEEEECCEEEEEEEEEEEEEECCCE--------------EEEEECCCCCCCCCHHHHCCCCCEEEECCCCCCCC----
T ss_conf 771035146469999999999837822--------------68840323575531121104564011036788787----
Q ss_pred CEEEEEEEECCC--CCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 999507700425--6479966887787888789997888
Q gi|254780333|r 304 GYMVPILGKITM--DMTMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 304 G~~~pivGrv~M--D~~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
-..+-|.|..|+ |.+.-|+. .|++++||.+++..-.
T Consensus 314 ~~~~~i~G~~C~~~D~l~~~~~-lP~l~~GD~l~~~~~G 351 (372)
T 2nva_A 314 YVPSVLYGCTCDGVDVINHNVA-LPELHIGDWVYFPSWG 351 (372)
T ss_dssp EEEEEEECSSSCTTCEEEEEEE-EECCCTTCEEEESSCC
T ss_pred EEEEEEEECCCCCCCEECCCCC-CCCCCCCCEEEECCCC
T ss_conf 7789999379884758886631-7999999999885945