HHsearch results for GI: 254780333 and protein with PDBid: 3gwq_A
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=100.00 E-value=1.3e-40 Score=281.04 Aligned_cols=311 Identities=11% Similarity=0.039 Sum_probs=232.4
Q ss_pred CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEE
Q ss_conf 850999868899999999986289--975999993286657989999999987998999855999999998389852673
Q gi|254780333|r 5 EFLRLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFV 82 (370)
Q Consensus 5 ~~~~leIdl~al~~Ni~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~lR~~g~~~~Ilv 82 (370)
..|.+.||++++++|++.+++.+. +.++.+++|+ |+..++++.+.++|+++|+|++++||..+|++|++..++.
T Consensus 45 ~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kt----h~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~~illa 120 (426)
T 3gwq_A 45 SLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKT----TMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMA 120 (426)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTT----TCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEEC
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECC----CCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEEE
T ss_conf 997399849999999999999887569749998111----4649999999977998799860999999997699987994
Q ss_pred ECCCCHHHHHHHHHH------HHHCCCCCHHHHHHHHHHH-HCCCCCCCEEEECCCCCCCCCC-HHHHHHHHHHHHHH-H
Q ss_conf 068974698888754------2101348998999988887-6088776167612666765569-88999999888863-1
Q gi|254780333|r 83 LYGIHPGQEKIIFDT------NLIPVISSVPQLTFYSKLM-SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNK-K 153 (370)
Q Consensus 83 l~~~~~~~~~~~~~~------~i~~~i~s~~~l~~l~~~~-~~~~~~~vhlkiDTGM~R~G~~-~~e~~~~~~~~~~~-~ 153 (370)
+..+.+.....+.+. +++.++.|.++++.+++++ +.+.+++||||+||||+|.|+. .+++.++++.+... +
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG~~R~G~~~~e~~~~l~~~i~~~~~ 200 (426)
T 3gwq_A 121 NQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTGVRDAAQRNAVLEAITRYPD 200 (426)
T ss_dssp SCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCTTSSSSBCSHHHHHHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 67789799999999863557405999878999999999887568068987650567765666665899999999985778
Q ss_pred CCCHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHC-CC------------CHHHCCCCHHCCCCCCCCHHHCCCCC
Q ss_conf 0001243201243333466--788999999999975434-88------------60111641100477322202048735
Q gi|254780333|r 154 LGQLSLIISHLACADDPSS--HVNSVQLERFRTLISHYK-GI------------EASLASSSGILLGPNYHFQLTRPGIS 218 (370)
Q Consensus 154 ~~~i~gi~THfa~ad~~~~--~~~~~Q~~~F~~~~~~~~-~~------------~~h~~nS~~~l~~p~~~~d~vR~Gi~ 218 (370)
.+.+.|+++|++++++.++ .+.+.+.+.+..+.+..+ .. ..|.+||...+..+...++++|||..
T Consensus 201 ~l~l~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~~~~~~~~~~~~~~~~~~~~~vrpG~~ 280 (426)
T 3gwq_A 201 TLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGCY 280 (426)
T ss_dssp TEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEECCCCS
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEECCEEE
T ss_conf 86566998515334773439999999999999999985327887046446885401003310025567640269734479
Q ss_pred CCCCCCC---------------CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEECCCCCCCEECC
Q ss_conf 3067877---------------6755676410012368863267148983466565346-77641797123300260102
Q gi|254780333|r 219 LYGGTDK---------------INKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKL-TRDSLIAVAAIGYADGYPLT 282 (370)
Q Consensus 219 lYG~~~~---------------~~~~~~l~pv~~l~s~i~~ir~l~~G~~VgYg~~~~~-~~~~~iavipiGYaDG~pr~ 282 (370)
+|+..+. ......++|++++.++++.++. +..-.++||..... +.....+..+.+|+++.+
T Consensus 281 l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~-~~~~~v~~G~~~~~~d~g~~~~~~~~~~g~~~~-- 357 (426)
T 3gwq_A 281 LTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE-PDRAIIGLGKRDSAFDAGMPEPARHYRPGNEAP-- 357 (426)
T ss_dssp SSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE-TTEEEESCCTTTSCGGGCCCEEEEEECTTSSSC--
T ss_pred EEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC-CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCC--
T ss_conf 97046311102332001351002333123201688778976556-875998165468750467775621023566676--
Q ss_pred CCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCC-EEEECCCCCCCCCCCEEEEECCC
Q ss_conf 36854334443232886999999950770042564-79966887787888789997888
Q gi|254780333|r 283 LSGLDSEHSPSVFLGGKGFIKGYMVPILGKITMDM-TMFDITDSLSIEVGDYIQIFGPD 340 (370)
Q Consensus 283 ls~~~~~~~~~~~~~~~vli~G~~~pivGrv~MD~-~~vdvt~~~~~~~GD~V~l~G~~ 340 (370)
.+++.+..++|+| |||| +|||+++..++++||+|.|+=.+
T Consensus 358 ----------------~~~~~~~~~~i~g--~~dqH~~i~~~~~~~l~vGD~V~~~p~H 398 (426)
T 3gwq_A 358 ----------------RDIAASEGWEIFG--LMDQHAYLRIPAGADLKVGDMIAFDISH 398 (426)
T ss_dssp ----------------EECCGGGCCEEEE--ECSSCEEEECCTTCSCCTTCEEEEECSS
T ss_pred ----------------CCCCCCCCEEEEE--ECCCCEEEECCCCCCCCCCCEEEEECCC
T ss_conf ----------------3013799827989--8477208987899989999999998287