RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (370 letters)



>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center
           for infectious disease, iodide SOAK, LLP, CAT-scratch
           disease; HET: LLP; 2.04A {Bartonella henselae}
          Length = 376

 Score =  276 bits (707), Expect = 5e-75
 Identities = 119/365 (32%), Positives = 189/365 (51%), Gaps = 14/365 (3%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
              ID+ A+  N+ ++         +AVVK NAYGLG  KIAPALY AG + FFV  +EE
Sbjct: 22  IATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEE 81

Query: 68  GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYA 125
            ++L+   P+  +  L    P + E+ +  + +IP+++S   +  + +         P  
Sbjct: 82  ALQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAI 141

Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           +QVDT  +RLGL  +E      N    +  ++  I+SHLA  +D S   N+ QL  F+ +
Sbjct: 142 IQVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRV 201

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245
           ++     + S A+S GI LG +++F L RPGI+LYG         P++ VV  EA+++  
Sbjct: 202 LAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQS 261

Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305
           R   AG  V Y       R S +A  +IGYADG+P  LS             G  +  G+
Sbjct: 262 RFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGH 310

Query: 306 MVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364
            +PI+G I+MD  + D TD     + GD++++ GP   L+ V+  + T  +++L  +G R
Sbjct: 311 KLPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKR 370

Query: 365 YAKFY 369
           Y + Y
Sbjct: 371 YKRIY 375


>3oo2_A Alanine racemase 1; infectious diseases, center for structural of
           infectious diseases (csgid); 2.37A {Staphylococcus
           aureus subsp}
          Length = 385

 Score =  268 bits (687), Expect = 1e-72
 Identities = 96/381 (25%), Positives = 158/381 (41%), Gaps = 28/381 (7%)

Query: 3   SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           S+++ R   + +DL A+ +N+   + L  N    AVVK NAYGLG  K+A  L   G   
Sbjct: 5   SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 64

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-- 117
           F V +++E ++LR++   A+I VL  +            +   + S   L    K +S  
Sbjct: 65  FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 124

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176
                   +++DTG  RLG+   +   +        +      + +H ACAD+P      
Sbjct: 125 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTTE 184

Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232
                   +    K       +S+G LL         RPGISLYG       +      +
Sbjct: 185 QYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHL 244

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +  V   A ++  +   AGE VSYG     T  + IA+  IGYADGY   +         
Sbjct: 245 KPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQ-------- 296

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
               G    + G+   ++G++ MD T+  + D   ++ GD + +          ++ VA 
Sbjct: 297 ----GSFVNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAE 350

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY++L  +  R  + Y
Sbjct: 351 KQHTINYEVLCNLSRRLPRIY 371


>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
           phosphate, PSI-2, protein structure initiative; 2.50A
           {Oenococcus oeni psu-1}
          Length = 395

 Score =  243 bits (621), Expect = 4e-65
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 36/382 (9%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVE 66
            + +DL A  +N   +   +   +  AV+K + YGLG   +A A       D   V++++
Sbjct: 11  WVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLD 70

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       I+VL        K+  D +++  I S+  L           +   +L
Sbjct: 71  EALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVITIPSLAWLQNLPD---FEGTLKVSL 127

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTL 185
            +DTG  R+G    + +       +K     L  + +H A AD+      +   E+ R  
Sbjct: 128 AIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 187

Query: 186 IS-----HYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG-----GTDKINKSHPM 232
                   +     S+A+S+  +     P   F   RPG  + G     G  K+  +  +
Sbjct: 188 QELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPPNLHL 247

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           + + +  + I  +R     + +SYG  +++  D  +A    GY DG+   +         
Sbjct: 248 ERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQ-------- 299

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    I G  +PI+G+ITMD TM  +       +G  + + G D    I +++VA 
Sbjct: 300 ----KSSVIINGKRMPIIGRITMDQTMVKLDR--KYPIGTRVTLIGKDGGEQITVEEVAN 353

Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370
            S T   ++   +  R  + YT
Sbjct: 354 YSHTIVDEIQTTLAPRIKRIYT 375


>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL
           biogenesis/degradation, isomerase, peptidoglycan
           synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A
           {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A*
           3b8w_A*
          Length = 379

 Score =  233 bits (594), Expect = 5e-62
 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
            + I+  AL++N   +  L+  ++  AVVK NAYG G  + A  L +A    F V  +EE
Sbjct: 25  TVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEE 82

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
            ++LR       + +L G    ++   I   +    + +  QL    +  S        +
Sbjct: 83  ALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEE-ASLDEPVTVWM 141

Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185
           ++DTG +RLG+  ++A  F H  +  K + Q   I+SH A AD+P       QL  F T 
Sbjct: 142 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEAR 241
                G  +  A+S GILL P  HF   RPGI LYG +             Q V++  + 
Sbjct: 202 CEGKPGQRSI-AASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 260

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           +I +R+  AGE V YGG     RD+ + V A+GY DGYP                G    
Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPS-----------GTPVL 309

Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361
           + G  VPI+G++ MDM   D+      + GD + ++G  + ++ +A  +  + Y+L+ R+
Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369

Query: 362 GTRYAKFY 369
            +R A  Y
Sbjct: 370 TSRVAMKY 377


>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
           phosphonate; HET: IN5; 1.60A {Bacillus
           stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
           2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
           1ftx_A*
          Length = 388

 Score =  232 bits (591), Expect = 1e-61
 Identities = 99/381 (25%), Positives = 158/381 (41%), Gaps = 29/381 (7%)

Query: 4   NEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           N+F R    ++DL A+ +N  ++   L  +    AVVK NAYG G  ++A     AG   
Sbjct: 2   NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61

Query: 60  FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119
             V  ++E + LR    +A I VL    P    +     +   +     L   S L S  
Sbjct: 62  LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121

Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQ 178
               + L++DTG  RLG+  +E          +     L  + +H A AD+ ++   S Q
Sbjct: 122 FPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQ 181

Query: 179 LERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPM 232
             RF  ++            A+S+  L  P+  F + R GI++YG       K    +P+
Sbjct: 182 YTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPL 241

Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292
           +   +  +R++ ++K   GE VSYG       +  I    IGYADG+   L         
Sbjct: 242 KEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQ-------- 293

Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348
                    + G   PI+G+I MD  M  +     + VG  + + G      I +DDVA 
Sbjct: 294 ----HFHVLVDGQKAPIVGRICMDQCMIRLPG--PLPVGTKVTLIGRQGDEVISIDDVAR 347

Query: 349 ASGTTNYDLLVRIGTRYAKFY 369
              T NY++   I  R  + +
Sbjct: 348 HLETINYEVPCTISYRVPRIF 368


>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis,
           PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal
           phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB:
           2vd9_A*
          Length = 391

 Score =  231 bits (590), Expect = 2e-61
 Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 32/387 (8%)

Query: 1   MHSNEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56
           M    F R   +++DL A+ NN   +   +  +    AVVK NAYG     +A     AG
Sbjct: 3   MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAG 62

Query: 57  VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116
                V  ++E + LR     A I VL    P    +  + ++   +     +     L 
Sbjct: 63  ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122

Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175
               +  Y +  D+G  R+G+    E   F  +       +L  + +H A AD+  +   
Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182

Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKI 226
             Q   F   +S              A+S+  L      F   R GI++YG +     + 
Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                ++  ++    +  I++ + G+ +SY    +   +  IA  AIGYADG+   L   
Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQ-- 300

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342
                     G +  + G  VPI+G++TMD  M  +     + +G  + + G      I 
Sbjct: 301 ----------GFEVLVNGXRVPIVGRVTMDQFMIHLPC--EVPLGTXVTLIGRQGDEYIS 348

Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369
             +VA  SGT NY+++  I  R  + +
Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375


>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX
           DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2
           c.1.6.1 PDB: 1vfh_A* 1vft_A*
          Length = 386

 Score =  228 bits (583), Expect = 1e-60
 Identities = 100/376 (26%), Positives = 160/376 (42%), Gaps = 29/376 (7%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70
           IDL A++ N  ++ A +  +   AVVK NAYG G    A A   AG       + EE ++
Sbjct: 12  IDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALE 71

Query: 71  LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVD 129
           LR    Q RI        G  +   +T++   +S +  L            +    L+ D
Sbjct: 72  LRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD 131

Query: 130 TGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           TG  R G    +  +    +     +   Q++ + SH ACAD+P      +QL+ FR ++
Sbjct: 132 TGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDML 191

Query: 187 SHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVT 237
           ++ +          +A+S   L  P  HF L R G+++YG +            ++  +T
Sbjct: 192 AYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPAMT 251

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
             A + L++   AG  VSYG       ++ +A+   GYADG P   SG            
Sbjct: 252 LRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-----------R 300

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353
           G   + G +    G+I MD  + D+ + L  E GD   I G         +D A A+ T 
Sbjct: 301 GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAHTI 359

Query: 354 NYDLLVRIGTRYAKFY 369
            Y+++ RIG R  + Y
Sbjct: 360 AYEIVTRIGGRVPRVY 375


>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
           {Corynebacterium glutamicum}
          Length = 361

 Score =  227 bits (580), Expect = 2e-60
 Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 20/370 (5%)

Query: 7   LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           L  KIDL A+ +N   +  ++G A+  AVVK NAY  G EK+AP +   G   F V ++ 
Sbjct: 4   LTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLA 63

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           E ++LR       +           +   D N+   + S           +       ++
Sbjct: 64  EAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKALI--ETDAEHIRVSI 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G +R G+  QE              +++ + +HLACAD+P +     Q+  FR  +
Sbjct: 122 KIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRAL 181

Query: 187 S-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241
           +       +     + +S   L   + H ++ RPG++ YG        H ++  +T EA+
Sbjct: 182 ALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAK 241

Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301
           + ++++  AG+  SYG   +      +AV   GYADG P    G                
Sbjct: 242 VSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQG-----------KFSVT 290

Query: 302 IKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLV 359
           I G   P +G++ MD  +  + D+   +E G    IFG +     D A    T NY+++ 
Sbjct: 291 IDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVC 350

Query: 360 RIGTRYAKFY 369
           R   R  + Y
Sbjct: 351 RPTGRTVRAY 360


>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure
           for C-terminal domain, internal/external aldimine forms,
           isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas
           aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
          Length = 357

 Score =  226 bits (577), Expect = 6e-60
 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 20/367 (5%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R  IDL AL++N+      +G AR  AV+K +AYG G  + A AL  A    F V  +EE
Sbjct: 5   RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALA-AEADGFAVACIEE 62

Query: 68  GVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126
           G++LR    +   + +       + ++I   +   V+    QL    +           L
Sbjct: 63  GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLA-RPLNVWL 121

Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186
           ++D+G +R+G   ++                 +++SH + AD+        QL  F    
Sbjct: 122 KMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAAS 181

Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243
              +G   SL +S  +L  P       RPGI LYG T        +  ++ V+T E+++I
Sbjct: 182 QGLEGEI-SLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESKVI 240

Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303
            +R   AGE V YG +    R   I V A+GYADGYP   +            G   FI 
Sbjct: 241 SVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAAD-----------GTLVFID 289

Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
           G    ++G+++MDM   D+TD     +G  ++++GP++ +  +A   G+  Y LL  +  
Sbjct: 290 GKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNLK- 348

Query: 364 RYAKFYT 370
           R  + Y+
Sbjct: 349 RVPRVYS 355


>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate;
           HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB:
           3e6e_A*
          Length = 371

 Score =  225 bits (573), Expect = 2e-59
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 27/375 (7%)

Query: 8   RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66
           RL ID  A+  N       L       AVVK N YG G  + A A    G   F V  ++
Sbjct: 10  RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69

Query: 67  EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124
           E ++LR    Q  I +L  +      ++   +L   +++   L    + ++         
Sbjct: 70  EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129

Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183
            L+VDTG  R+G    E            K      I +H + AD+  +     Q  RF+
Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFK 189

Query: 184 TLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238
            +++          +++S+  L  P+    + R G+++YG     +K+  S+ ++  +  
Sbjct: 190 AVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKPALRL 249

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
            + +I +++  AGE + YG       +  I    IGYADG+   L             G 
Sbjct: 250 TSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQ------------GF 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
              + G    I+G++ MD  M  + +   + VG  + + G D      L  VA    T +
Sbjct: 298 TVLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGPVVTLVGKDGNEENTLQMVAEKLETIH 355

Query: 355 YDLLVRIGTRYAKFY 369
           Y++      R  + Y
Sbjct: 356 YEVACTFSQRIPREY 370


>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal
           domain, internal aldimine form, isomerase; HET: PLP;
           1.90A {Mycobacterium tuberculosis}
          Length = 384

 Score =  217 bits (553), Expect = 4e-57
 Identities = 102/377 (27%), Positives = 167/377 (44%), Gaps = 26/377 (6%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
              +DL A+++N   +   +G+A+  AVVK + YG G  ++A     AG  +  V +V+E
Sbjct: 13  EAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDE 72

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126
            + LR     A +                 ++   +SS+ QL      +   G +    +
Sbjct: 73  ALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTV 132

Query: 127 QVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183
           +VDTG NR G+        L     +  +   +L  ++SH+  AD P   +N VQ +RF 
Sbjct: 133 KVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFT 192

Query: 184 TLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVT 237
             ++       +   A L++SS  +  P+  F L RPGI++YG +         +   +T
Sbjct: 193 AFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMT 252

Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297
            +  + L++   AGE VSYG      RD+ +A+  IGYADG   +L G            
Sbjct: 253 VKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG-----------R 301

Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIK----LDDVALASGT 352
            +  I G   P +G+I MD  M D+    L +  GD   +FGP I+      D A   GT
Sbjct: 302 LEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGT 361

Query: 353 TNYDLLVRIGTRYAKFY 369
            +Y+++     R  + Y
Sbjct: 362 IHYEVVTSPRGRITRTY 378


>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC,
           PLP, TIM barrel, structural genomics; HET: PLP; 1.70A
           {Oenococcus oeni psu-1}
          Length = 380

 Score =  212 bits (541), Expect = 7e-56
 Identities = 83/375 (22%), Positives = 139/375 (37%), Gaps = 28/375 (7%)

Query: 8   RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67
           R++   ++L  N      +SG       VK NAYG G  +++      GV    V+ ++E
Sbjct: 11  RIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDE 70

Query: 68  GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127
           G+ +R       I +L  I      I    + +  +SS+  L    K +         L 
Sbjct: 71  GIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADK-ILGKEKLSVNLA 129

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTL 185
           VDTG NR+G+  ++ L        +     S     +H A +D+P  H    Q  R+  L
Sbjct: 130 VDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL 189

Query: 186 ISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYGGTDKINKSHP---MQTVVTA 238
           I            +SG  +  +        + R G  +YG         P   ++ V   
Sbjct: 190 IDGLIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKPVFEL 249

Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298
           ++ +  ++K  AGE +SYG +   +RD+ I    IGY DG+                   
Sbjct: 250 KSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQ------------DF 297

Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354
           +  I G     +G+I MD  M  +       +G  + + G        L D+   SG   
Sbjct: 298 QLLIDGQKCRQVGQIAMDQMMVALPH--EYPIGTEVTLIGKSGKYENTLYDLHKHSGVPP 355

Query: 355 YDLLVRIGTRYAKFY 369
           + + V    R  +  
Sbjct: 356 WKITVAFSDRLKRMV 370


>3llx_A Predicted amino acid aldolase or racemase; structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative; HET: LLP TRS; 1.50A {Idiomarina
           loihiensis}
          Length = 376

 Score = 67.3 bits (163), Expect = 6e-12
 Identities = 46/353 (13%), Positives = 108/353 (30%), Gaps = 49/353 (13%)

Query: 8   RLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65
            L ID   LK+N + +        +     +K     L   + A  L ++      V+++
Sbjct: 16  YLLIDEAKLKSNINYLKQRVESLGSHLRPHLK----TLRTLEAAGYLLDSKSAPATVSTL 71

Query: 66  EEGVKLRLYTPQARIFVLYGIHPGQEKIIF----DTNLIPVISSVPQLTFYSKLMS-CGV 120
            E            ++ +       +++        NL  ++ ++ Q        +  G 
Sbjct: 72  AEAEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ 131

Query: 121 SHPYALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177
                +++D+  +R G+   ++           +          S+    +    +    
Sbjct: 132 DFSVFIEIDSDDHRGGIKPSDSKLLTIAKTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQ 191

Query: 178 QLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLT-------RPGISLYGGTD--KI 226
           + +  R   ++ +  GI  ++ S       P  HF          R G+          I
Sbjct: 192 ECDAVRIARNNLETAGIHCAITSVGS---TPTAHFGEDFSDISEVRAGVYTTFDLVMKNI 248

Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286
                    ++    +I   K     L++  G   L+RDS  A     +  G    + G 
Sbjct: 249 GVCDFSHIAMSVVTTVIGHNKE-KNWLLTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGS 307

Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE---VGDYIQI 336
             +                    +   + +  + +++D+  +E   VG  ++I
Sbjct: 308 VLDGL-----------------CVNSTSQEHGVIELSDAYQLEDFPVGHQLRI 343


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 77/491 (15%), Positives = 128/491 (26%), Gaps = 232/491 (47%)

Query: 4   NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDN---AYGLGCE-------KIAP-A 51
           N +L          N+ H++ A L     T  V        Y            K +  A
Sbjct: 93  NCYLE--------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144

Query: 52  LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--------E-KIIFDT---NL 99
           L+ A         V EG         A++  ++G   GQ        E + ++ T    +
Sbjct: 145 LFRA---------VGEG--------NAQLVAIFG---GQGNTDDYFEELRDLYQTYHVLV 184

Query: 100 IPVISSV-PQL-----------TFYSK-------------------LMSCGVSHP----- 123
             +I      L             +++                   L+S  +S P     
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244

Query: 124 ----YAL--QVDTGFNRLGLS---LQEAL-----------------------DFTHNSFN 151
               Y +  ++      LG +   L+  L                        F  +   
Sbjct: 245 QLAHYVVTAKL------LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-- 296

Query: 152 KKLGQLSLII---SHLACAD---DPS-------------SHVNSVQ-LERFRTLISHYKG 191
           +K   +   I    + A  +    PS             S + S+  L +   +  +   
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNK 355

Query: 192 IEASLASSSGILL----GPNYHFQLTRPGISLYG------------GTD---------KI 226
             + L +   + +    G   +  ++ P  SLYG            G D         K+
Sbjct: 356 TNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414

Query: 227 NKSH-------PMQT--VVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYA 276
             S+       P  +  +V A   I    K L    VS+          + I V    Y 
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLIN---KDLVKNNVSFNA------KDIQIPV----YD 461

Query: 277 DGYPLTLSGLD-SEHSPSVFLGGKGFIKGYMVPILGK-ITMDM------TMFDITDSLSI 328
                T  G D    S S+               +   I          T F  T     
Sbjct: 462 -----TFDGSDLRVLSGSI------------SERIVDCIIRLPVKWETTTQFKAT----- 499

Query: 329 EVGDYIQIFGP 339
               +I  FGP
Sbjct: 500 ----HILDFGP 506



 Score = 38.0 bits (88), Expect = 0.003
 Identities = 59/369 (15%), Positives = 95/369 (25%), Gaps = 161/369 (43%)

Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF------------ 150
            ++  +L    K +     +  +L   +   +    L   L    N +            
Sbjct: 54  PTTPAEL--VGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107

Query: 151 -----NKKLGQLSLIISH----LACADDPSSHV------NSVQ----------------- 178
                +  L +   +I +       A  P           +V                  
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167

Query: 179 --LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTR-P--GISLYG-GTDKINK--SH 230
              E  R L   Y  +   L   S   L      +L R       ++  G + I +   +
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETL-----SELIRTTLDAEKVFTQGLN-ILEWLEN 221

Query: 231 PMQT-----VVTAEARIILIRKALAG--ELVSY-------G---GQKKLTRDSL------ 267
           P  T     +++      LI     G  +L  Y       G   G+    R  L      
Sbjct: 222 PSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGE---LRSYLKGATGH 273

Query: 268 ---IAVAA------------------------IGYA--DGYP---LTLSGL-DS----EH 290
              +  A                         IG    + YP   L  S L DS    E 
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333

Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIFG---PDIKLDDV 346
            PS              P          M  I++ L+ E V DY+       P  K  ++
Sbjct: 334 VPS--------------P----------MLSISN-LTQEQVQDYVNKTNSHLPAGKQVEI 368

Query: 347 ALASGTTNY 355
           +L +G  N 
Sbjct: 369 SLVNGAKNL 377



 Score = 36.1 bits (83), Expect = 0.013
 Identities = 35/247 (14%), Positives = 63/247 (25%), Gaps = 102/247 (41%)

Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE--- 239
           R L   +  +E        +L+     F  ++    L    ++ NK  P  T   A    
Sbjct: 7   RPLTLSHGSLEHV------LLVPTASFFIASQ----LQ---EQFNKILPEPTEGFAADDE 53

Query: 240 --------ARII--LIRK-------------------------------ALAGELVSYGG 258
                    + +  +                                  ALA +L+    
Sbjct: 54  PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113

Query: 259 QKKLTRDSLI-----AVAAIG--YADGYPLTLSGL----DSEHSP--SVFLGGKGFIKGY 305
              +    LI     A       +        S L       ++   ++F GG+G    Y
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIF-GGQGNTDDY 169

Query: 306 MVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363
                     +    ++     L   VGD I+       L +  L   T + +       
Sbjct: 170 ---------FEELRDLYQTYHVL---VGDLIKFSAE--TLSE--LIRTTLDAE------- 206

Query: 364 RYAKFYT 370
              K +T
Sbjct: 207 ---KVFT 210



 Score = 34.1 bits (78), Expect = 0.048
 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 57/208 (27%)

Query: 16   LKNNWHSM---NALSGNARTAAVVKD-----NAYGLGCEK--------IAPALYNAGVQD 59
            ++ N+ +M     + G  +T  + K+      +Y    EK          PAL       
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL------- 1736

Query: 60   FFVTSVE----EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115
               T +E    E +K +   P    F  + +  G+   +     +  I S+ ++ FY + 
Sbjct: 1737 ---TLMEKAAFEDLKSKGLIPADATFAGHSL--GEYAALASLADVMSIESLVEVVFY-RG 1790

Query: 116  MSCGVSHP--------YAL-QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIIS--- 162
            M+  V+ P        Y +  ++ G  R+  S  QEAL +      K+ G L  I++   
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPG--RVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848

Query: 163  ----HLACAD----DPSSHV-NSVQLER 181
                ++A  D    D  ++V N ++L++
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQK 1876


>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
           structural genomics, PSI-2, protein structure
           initiative; 1.71A {Bifidobacterium adolescentis
           ATCC15703}
          Length = 282

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 37/257 (14%), Positives = 68/257 (26%), Gaps = 53/257 (20%)

Query: 11  IDLTALKNNWHSMNALSGNARTAAVVKDNAYGL-------GCEKIAPALYNAGVQDFFVT 63
                + +  H +      A   A  +  +  L          +I  A  +AGV+     
Sbjct: 20  ARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIM-AAIDAGVRMIGEN 78

Query: 64  SVEE-------------------GVKLRLYTPQARIFVLYGIHPGQE----KIIFDTNLI 100
             +E                   GV        A     + I   Q     K++   + I
Sbjct: 79  RPQEVTAKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTI 138

Query: 101 PVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQL 157
             + S+      S+     G++    L+V+        G     A+            +L
Sbjct: 139 ESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIEL 198

Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSSG--------ILL 204
             +++  A   D +           R        S   G +     S G        I  
Sbjct: 199 QGLMTIGAHVHDETV--IRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAE 256

Query: 205 GPNYHFQLTRPGISLYG 221
           G      + R G +++G
Sbjct: 257 GST----IVRVGTAIFG 269


>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel,
           pyridoxal-5'-phosphate, selenomethionine, MAD,
           structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces
           cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
          Length = 256

 Score = 33.0 bits (75), Expect = 0.13
 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 37/221 (16%)

Query: 34  AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV-KLRLYTPQARIFVLYGIHPGQEK 92
            V K          I   LY+ GV++F    V+E + K +L     +   + G+   + K
Sbjct: 45  VVSK----LKPASDIQ-ILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 99

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSH-------PYALQVDTG--FNRLGLSLQEAL 143
            +     +  + ++  L    KL                 +Q++T     + GL+ +  +
Sbjct: 100 DLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEI 159

Query: 144 DFTHNSF-NKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS- 199
               + F +++   + L  +++  +         +S +   F TL+   K I+A   +S 
Sbjct: 160 FEVIDFFLSEECKYIKLNGLMTIGSWNVSHE---DSKENRDFATLVEWKKKIDAKFGTSL 216

Query: 200 ------SG-----ILLGPNYHFQLTRPGISLYGGTDKINKS 229
                 S      I  G        R G  ++G     N++
Sbjct: 217 KLSMGMSADFREAIRQGTA----EVRIGTDIFGARPPKNEA 253


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.4 bits (65), Expect = 1.2
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 39/154 (25%)

Query: 10  KIDLTALKNNWHSMN---------ALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQD 59
           K+ L  L N WHS +         A+ G  R T  +  +N    G EK+       GV+ 
Sbjct: 644 KLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKM-------GVRT 696

Query: 60  FFVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117
           F  +  E    L  L TP+  +  L    P    ++ D N    +  VP+L  F +KL  
Sbjct: 697 F--SQKEMAFNLLGLLTPE--VVELCQKSP----VMADLN--GGLQFVPELKEFTAKLRK 746

Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151
                     V+T   R  +S++ AL+  H   N
Sbjct: 747 --------ELVETSEVRKAVSIETALE--HKVVN 770


>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A
           {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
          Length = 318

 Score = 28.9 bits (64), Expect = 1.9
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187
           +D G  +L  + Q++L  +  SFN   G+L  + S L       S     Q+++ R    
Sbjct: 135 LDDGITKLNEA-QKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRK--- 190

Query: 188 HYKGIEASLASSSGILLGP 206
                EA   +++G+++GP
Sbjct: 191 -----EAYAGAAAGVVVGP 204


>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
           {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
           3jqp_A*
          Length = 316

 Score = 27.9 bits (61), Expect = 3.7
 Identities = 4/41 (9%), Positives = 12/41 (29%)

Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
            +         G    I     +LD+        +++++  
Sbjct: 40  INHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINT 80


>1jji_A Carboxylesterase; alpha-beta hydrolase fold; HET: EPE; 2.20A
          {Archaeoglobus fulgidus} SCOP: c.69.1.2
          Length = 311

 Score = 27.6 bits (60), Expect = 4.7
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 46 EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89
           +++       V+D  +      +++R+Y  +    VL   H G
Sbjct: 45 RQLSQHERVERVEDRTIKGRNGDIRVRVYQQKPDSPVLVYYHGG 88


>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
          metabolism, E. coli, kelch repeat, beta-propeller,
          unknown function.; HET: MSE; 1.5A {Escherichia coli}
          Length = 357

 Score = 26.8 bits (58), Expect = 7.5
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 2  HSNEFLRLKIDLTALKNNWHSMNALSGNAR---TAAVVKDNAYGLG 44
              + +L  D  A    W ++ A  G  R   T+A +  N Y  G
Sbjct: 29 AGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFG 72


>3ell_A Hasap (heme acquisition protein hasap); alpha beta protein,
           heme-binding protein, heme binding protein; HET: HEM;
           1.70A {Pseudomonas aeruginosa}
          Length = 184

 Score = 26.7 bits (59), Expect = 7.7
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 20/87 (22%)

Query: 93  IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152
            I   +L   + S P  T + KL S                   ++L + L    +S   
Sbjct: 67  FIAGGDLHYTLFSNPSHTLWGKLDS-------------------IALGDTLTGGASSGGY 107

Query: 153 KLGQLSLIISHLACADDP-SSHVNSVQ 178
            L    +  S+L            +V 
Sbjct: 108 ALDSQEVSFSNLGLDSPIAQGRDGTVH 134


>1lln_A Antiviral protein 3; ribosome inactivating protein,
           polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A
           {Phytolacca americana} SCOP: d.165.1.1
          Length = 262

 Score = 26.8 bits (59), Expect = 9.0
 Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
                  +      +L+ NW S+        +  + K    G     +   L +   + +
Sbjct: 187 FDDANGYQPDPXAISLEKNWDSV--------SXVIAKVGTSGDSTVTLPGDLXDENNKPW 238

Query: 61  FVTSVEE 67
              ++ +
Sbjct: 239 TTATMND 245


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0526    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,101,269
Number of extensions: 142320
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 29
Length of query: 370
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 276
Effective length of database: 3,414,294
Effective search space: 942345144
Effective search space used: 942345144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)