RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] (370 letters) >3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} Length = 376 Score = 276 bits (707), Expect = 5e-75 Identities = 119/365 (32%), Positives = 189/365 (51%), Gaps = 14/365 (3%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 ID+ A+ N+ ++ +AVVK NAYGLG KIAPALY AG + FFV +EE Sbjct: 22 IATIDVRAIVANYRTLAQHVAPTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEE 81 Query: 68 GVKLRLYTPQARIFVLYGIHPGQ-EKIIFDTNLIPVISSVPQLT-FYSKLMSCGVSHPYA 125 ++L+ P+ + L P + E+ + + +IP+++S + + + P Sbjct: 82 ALQLKAVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAI 141 Query: 126 LQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 +QVDT +RLGL +E N + ++ I+SHLA +D S N+ QL F+ + Sbjct: 142 IQVDTNMSRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRV 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEARIILI 245 ++ + S A+S GI LG +++F L RPGI+LYG P++ VV EA+++ Sbjct: 202 LAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHGKHPTPLKAVVKVEAQVLQS 261 Query: 246 RKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIKGY 305 R AG V Y R S +A +IGYADG+P LS G + G+ Sbjct: 262 RFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSN-----------KGTVYFNGH 310 Query: 306 MVPILGKITMDMTMFDITD-SLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGTR 364 +PI+G I+MD + D TD + GD++++ GP L+ V+ + T +++L +G R Sbjct: 311 KLPIVGHISMDSIIVDATDLDKKPQRGDWVELIGPHQPLEKVSTDTNTIPHEILTSLGKR 370 Query: 365 YAKFY 369 Y + Y Sbjct: 371 YKRIY 375 >3oo2_A Alanine racemase 1; infectious diseases, center for structural of infectious diseases (csgid); 2.37A {Staphylococcus aureus subsp} Length = 385 Score = 268 bits (687), Expect = 1e-72 Identities = 96/381 (25%), Positives = 158/381 (41%), Gaps = 28/381 (7%) Query: 3 SNEFLR---LKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 S+++ R + +DL A+ +N+ + L N AVVK NAYGLG K+A L G Sbjct: 5 SDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVVKANAYGLGSVKVARHLMENGATF 64 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMS-- 117 F V +++E ++LR++ A+I VL + + + S L K +S Sbjct: 65 FAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 124 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEAL-DFTHNSFNKKLGQLSLIISHLACADDPSSHVNS 176 +++DTG RLG+ + + + + +H ACAD+P Sbjct: 125 QEKKLWLHIKLDTGMGRLGIKDTKTYQEVIEIIQQYEQLVFEGVFTHFACADEPGDMTTE 184 Query: 177 VQLERFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYG----GTDKINKSHPM 232 + K +S+G LL RPGISLYG + + Sbjct: 185 QYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVKVHL 244 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + V A ++ + AGE VSYG T + IA+ IGYADGY + Sbjct: 245 KPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQ-------- 296 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 G + G+ ++G++ MD T+ + D ++ GD + + ++ VA Sbjct: 297 ----GSFVNVNGHQCEVIGRVCMDQTIVKVPD--QVKAGDSVILIDNHRESPQSVEVVAE 350 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++L + R + Y Sbjct: 351 KQHTINYEVLCNLSRRLPRIY 371 >3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Length = 395 Score = 243 bits (621), Expect = 4e-65 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 36/382 (9%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD-FFVTSVE 66 + +DL A +N + + + AV+K + YGLG +A A D V++++ Sbjct: 11 WVSVDLDAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLD 70 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR I+VL K+ D +++ I S+ L + +L Sbjct: 71 EALELRQADLTLPIWVLGAWDYSDLKLFIDHDIVITIPSLAWLQNLPD---FEGTLKVSL 127 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQ-LSLIISHLACADDPSSHVNSVQLERFRTL 185 +DTG R+G + + +K L + +H A AD+ + E+ R Sbjct: 128 AIDTGMTRIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 187 Query: 186 IS-----HYKGIEASLASSSGILLG---PNYHFQLTRPGISLYG-----GTDKINKSHPM 232 + S+A+S+ + P F RPG + G G K+ + + Sbjct: 188 QELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSNGELKMPPNLHL 247 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + + + I +R + +SYG +++ D +A GY DG+ + Sbjct: 248 ERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQ-------- 299 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 I G +PI+G+ITMD TM + +G + + G D I +++VA Sbjct: 300 ----KSSVIINGKRMPIIGRITMDQTMVKLDR--KYPIGTRVTLIGKDGGEQITVEEVAN 353 Query: 349 ASGTTNYDLLVRIGTRYAKFYT 370 S T ++ + R + YT Sbjct: 354 YSHTIVDEIQTTLAPRIKRIYT 375 >2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Length = 379 Score = 233 bits (594), Expect = 5e-62 Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 21/368 (5%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 + I+ AL++N + L+ ++ AVVK NAYG G + A L +A F V +EE Sbjct: 25 TVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADA--FGVARLEE 82 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEK-IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 ++LR + +L G ++ I + + + QL + S + Sbjct: 83 ALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEE-ASLDEPVTVWM 141 Query: 127 QVDTGFNRLGLSLQEALDFTHN-SFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTL 185 ++DTG +RLG+ ++A F H + K + Q I+SH A AD+P QL F T Sbjct: 142 KLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF 201 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVTAEAR 241 G + A+S GILL P HF RPGI LYG + Q V++ + Sbjct: 202 CEGKPGQRSI-AASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSS 260 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 +I +R+ AGE V YGG RD+ + V A+GY DGYP G Sbjct: 261 LIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPS-----------GTPVL 309 Query: 302 IKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRI 361 + G VPI+G++ MDM D+ + GD + ++G + ++ +A + + Y+L+ R+ Sbjct: 310 VNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKVSAYELITRL 369 Query: 362 GTRYAKFY 369 +R A Y Sbjct: 370 TSRVAMKY 377 >1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Bacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* Length = 388 Score = 232 bits (591), Expect = 1e-61 Identities = 99/381 (25%), Positives = 158/381 (41%), Gaps = 29/381 (7%) Query: 4 NEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQD 59 N+F R ++DL A+ +N ++ L + AVVK NAYG G ++A AG Sbjct: 2 NDFHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASR 61 Query: 60 FFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCG 119 V ++E + LR +A I VL P + + + L S L S Sbjct: 62 LAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALYSGP 121 Query: 120 VSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQ 178 + L++DTG RLG+ +E + L + +H A AD+ ++ S Q Sbjct: 122 FPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQ 181 Query: 179 LERFRTLISHYKG--IEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPM 232 RF ++ A+S+ L P+ F + R GI++YG K +P+ Sbjct: 182 YTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGIKPLLPYPL 241 Query: 233 QTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSP 292 + + +R++ ++K GE VSYG + I IGYADG+ L Sbjct: 242 KEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQ-------- 293 Query: 293 SVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVAL 348 + G PI+G+I MD M + + VG + + G I +DDVA Sbjct: 294 ----HFHVLVDGQKAPIVGRICMDQCMIRLPG--PLPVGTKVTLIGRQGDEVISIDDVAR 347 Query: 349 ASGTTNYDLLVRIGTRYAKFY 369 T NY++ I R + + Sbjct: 348 HLETINYEVPCTISYRVPRIF 368 >2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* Length = 391 Score = 231 bits (590), Expect = 2e-61 Identities = 89/387 (22%), Positives = 153/387 (39%), Gaps = 32/387 (8%) Query: 1 MHSNEFLR---LKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAG 56 M F R +++DL A+ NN + + + AVVK NAYG +A AG Sbjct: 3 MEEAPFYRDTWVEVDLDAIYNNVTHIXEFIPSDVEIFAVVKGNAYGHDYVPVAXIALEAG 62 Query: 57 VQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM 116 V ++E + LR A I VL P + + ++ + + L Sbjct: 63 ATRLAVAFLDEALVLRRAGITAPILVLGPSPPRDINVAAENDVALTVFQXEWVDEAIXLW 122 Query: 117 SCGVSHPYALQVDTGFNRLGLS-LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVN 175 + Y + D+G R+G+ E F + +L + +H A AD+ + Sbjct: 123 DGSSTMXYHINFDSGMGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYF 182 Query: 176 SVQLERFRTLISH-----YKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKI 226 Q F +S A+S+ L F R GI++YG + + Sbjct: 183 DXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSVEIRP 242 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ ++ + I++ + G+ +SY + + IA AIGYADG+ L Sbjct: 243 FLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQ-- 300 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IK 342 G + + G VPI+G++TMD M + + +G + + G I Sbjct: 301 ----------GFEVLVNGXRVPIVGRVTMDQFMIHLPC--EVPLGTXVTLIGRQGDEYIS 348 Query: 343 LDDVALASGTTNYDLLVRIGTRYAKFY 369 +VA SGT NY+++ I R + + Sbjct: 349 ATEVAEYSGTINYEIITTISFRVPRIF 375 >1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Length = 386 Score = 228 bits (583), Expect = 1e-60 Identities = 100/376 (26%), Positives = 160/376 (42%), Gaps = 29/376 (7%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVK 70 IDL A++ N ++ A + + AVVK NAYG G A A AG + EE ++ Sbjct: 12 IDLDAVRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALE 71 Query: 71 LRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV-SHPYALQVD 129 LR Q RI G + +T++ +S + L + L+ D Sbjct: 72 LRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD 131 Query: 130 TGFNRLGLSLQEALDFTHNSF---NKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 TG R G + + + + Q++ + SH ACAD+P +QL+ FR ++ Sbjct: 132 TGLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDML 191 Query: 187 SHYK-----GIEASLASSSGILLGPNYHFQLTRPGISLYGGT----DKINKSHPMQTVVT 237 ++ + +A+S L P HF L R G+++YG + ++ +T Sbjct: 192 AYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPAMT 251 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 A + L++ AG VSYG ++ +A+ GYADG P SG Sbjct: 252 LRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-----------R 300 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTT 353 G + G + G+I MD + D+ + L E GD I G +D A A+ T Sbjct: 301 GPVLVAGKIRRAAGRIAMDQFVVDLGEDL-AEAGDEAVILGDAERGEPTAEDWAQAAHTI 359 Query: 354 NYDLLVRIGTRYAKFY 369 Y+++ RIG R + Y Sbjct: 360 AYEIVTRIGGRVPRVY 375 >2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Length = 361 Score = 227 bits (580), Expect = 2e-60 Identities = 92/370 (24%), Positives = 158/370 (42%), Gaps = 20/370 (5%) Query: 7 LRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 L KIDL A+ +N + ++G A+ AVVK NAY G EK+AP + G F V ++ Sbjct: 4 LTTKIDLDAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLA 63 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 E ++LR + + D N+ + S + ++ Sbjct: 64 EAMQLRDIGISQEVLCWIWTPEQDFRAAIDRNIDLAVISPAHAKALI--ETDAEHIRVSI 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++D+G +R G+ QE +++ + +HLACAD+P + Q+ FR + Sbjct: 122 KIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRAL 181 Query: 187 S-----HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEAR 241 + + + +S L + H ++ RPG++ YG H ++ +T EA+ Sbjct: 182 ALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVAGLEHGLKPAMTWEAK 241 Query: 242 IILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGF 301 + ++++ AG+ SYG + +AV GYADG P G Sbjct: 242 VSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQG-----------KFSVT 290 Query: 302 IKGYMVPILGKITMDMTMFDITDSL-SIEVGDYIQIFGPD-IKLDDVALASGTTNYDLLV 359 I G P +G++ MD + + D+ +E G IFG + D A T NY+++ Sbjct: 291 IDGLDYPQVGRVCMDQFVISLGDNPHGVEAGAKAVIFGENGHDATDFAERLDTINYEVVC 350 Query: 360 RIGTRYAKFY 369 R R + Y Sbjct: 351 RPTGRTVRAY 360 >1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Length = 357 Score = 226 bits (577), Expect = 6e-60 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 20/367 (5%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R IDL AL++N+ +G AR AV+K +AYG G + A AL A F V +EE Sbjct: 5 RALIDLQALRHNYRLAREATG-ARALAVIKADAYGHGAVRCAEALA-AEADGFAVACIEE 62 Query: 68 GVKLRLYTPQA-RIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYAL 126 G++LR + + + + ++I + V+ QL + L Sbjct: 63 GLELREAGIRQPILLLEGFFEASELELIVAHDFWCVVHCAWQLEAIERASLA-RPLNVWL 121 Query: 127 QVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLI 186 ++D+G +R+G ++ +++SH + AD+ QL F Sbjct: 122 KMDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAAS 181 Query: 187 SHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTAEARII 243 +G SL +S +L P RPGI LYG T + ++ V+T E+++I Sbjct: 182 QGLEGEI-SLRNSPAVLGWPKVPSDWVRPGILLYGATPFERAHPLADRLRPVMTLESKVI 240 Query: 244 LIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKGFIK 303 +R AGE V YG + R I V A+GYADGYP + G FI Sbjct: 241 SVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAAD-----------GTLVFID 289 Query: 304 GYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 G ++G+++MDM D+TD +G ++++GP++ + +A G+ Y LL + Sbjct: 290 GKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALAAQFGSIPYQLLCNLK- 348 Query: 364 RYAKFYT 370 R + Y+ Sbjct: 349 RVPRVYS 355 >3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Length = 371 Score = 225 bits (573), Expect = 2e-59 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 27/375 (7%) Query: 8 RLKIDLTALKNNWHSM-NALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVE 66 RL ID A+ N L AVVK N YG G + A A G F V ++ Sbjct: 10 RLHIDTQAITENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLD 69 Query: 67 EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSC--GVSHPY 124 E ++LR Q I +L + ++ +L +++ L + ++ Sbjct: 70 EAIELREAGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRV 129 Query: 125 ALQVDTGFNRLGLSLQEALDFTHNSFNK-KLGQLSLIISHLACADDPSSHVNSVQLERFR 183 L+VDTG R+G E K I +H + AD+ + Q RF+ Sbjct: 130 HLKVDTGMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFK 189 Query: 184 TLIS--HYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGT---DKINKSHPMQTVVTA 238 +++ +++S+ L P+ + R G+++YG +K+ S+ ++ + Sbjct: 190 AVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSGNKLAPSYALKPALRL 249 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 + +I +++ AGE + YG + I IGYADG+ L G Sbjct: 250 TSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQ------------GF 297 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + G I+G++ MD M + + + VG + + G D L VA T + Sbjct: 298 TVLVNGKRCEIVGRVCMDQCMIRLAE--EVPVGPVVTLVGKDGNEENTLQMVAEKLETIH 355 Query: 355 YDLLVRIGTRYAKFY 369 Y++ R + Y Sbjct: 356 YEVACTFSQRIPREY 370 >1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Length = 384 Score = 217 bits (553), Expect = 4e-57 Identities = 102/377 (27%), Positives = 167/377 (44%), Gaps = 26/377 (6%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 +DL A+++N + +G+A+ AVVK + YG G ++A AG + V +V+E Sbjct: 13 EAMVDLGAIEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDE 72 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLM-SCGVSHPYAL 126 + LR A + ++ +SS+ QL + G + + Sbjct: 73 ALALRADGITAPVLAWLHPPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTV 132 Query: 127 QVDTGFNRLGLS---LQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFR 183 +VDTG NR G+ L + + +L ++SH+ AD P +N VQ +RF Sbjct: 133 KVDTGLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFT 192 Query: 184 TLISHY-----KGIEASLASSSGILLGPNYHFQLTRPGISLYGGT-DKINKSHPMQTVVT 237 ++ + A L++SS + P+ F L RPGI++YG + + +T Sbjct: 193 AFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMT 252 Query: 238 AEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLG 297 + + L++ AGE VSYG RD+ +A+ IGYADG +L G Sbjct: 253 VKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG-----------R 301 Query: 298 GKGFIKGYMVPILGKITMDMTMFDITDS-LSIEVGDYIQIFGPDIK----LDDVALASGT 352 + I G P +G+I MD M D+ L + GD +FGP I+ D A GT Sbjct: 302 LEVLINGRRCPGVGRICMDQFMVDLGPGPLDVAEGDEAILFGPGIRGEPTAQDWADLVGT 361 Query: 353 TNYDLLVRIGTRYAKFY 369 +Y+++ R + Y Sbjct: 362 IHYEVVTSPRGRITRTY 378 >3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} Length = 380 Score = 212 bits (541), Expect = 7e-56 Identities = 83/375 (22%), Positives = 139/375 (37%), Gaps = 28/375 (7%) Query: 8 RLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEE 67 R++ ++L N +SG VK NAYG G +++ GV V+ ++E Sbjct: 11 RIEFSKSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDE 70 Query: 68 GVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQ 127 G+ +R I +L I I + + +SS+ L K + L Sbjct: 71 GIAIRQAGIDDFILILGPIDVKYAPIASKYHFLTTVSSLDWLKSADK-ILGKEKLSVNLA 129 Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLI--ISHLACADDPSSHVNSVQLERFRTL 185 VDTG NR+G+ ++ L + S +H A +D+P H Q R+ L Sbjct: 130 VDTGMNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL 189 Query: 186 ISHYKGIEASLASSSGILLGPNYHFQ----LTRPGISLYGGTDKINKSHP---MQTVVTA 238 I +SG + + + R G +YG P ++ V Sbjct: 190 IDGLIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSEGVLGPIDKLKPVFEL 249 Query: 239 EARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGG 298 ++ + ++K AGE +SYG + +RD+ I IGY DG+ Sbjct: 250 KSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQ------------DF 297 Query: 299 KGFIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPD----IKLDDVALASGTTN 354 + I G +G+I MD M + +G + + G L D+ SG Sbjct: 298 QLLIDGQKCRQVGQIAMDQMMVALPH--EYPIGTEVTLIGKSGKYENTLYDLHKHSGVPP 355 Query: 355 YDLLVRIGTRYAKFY 369 + + V R + Sbjct: 356 WKITVAFSDRLKRMV 370 >3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Length = 376 Score = 67.3 bits (163), Expect = 6e-12 Identities = 46/353 (13%), Positives = 108/353 (30%), Gaps = 49/353 (13%) Query: 8 RLKIDLTALKNNWHSMNALSG--NARTAAVVKDNAYGLGCEKIAPALYNAGVQDFFVTSV 65 L ID LK+N + + + +K L + A L ++ V+++ Sbjct: 16 YLLIDEAKLKSNINYLKQRVESLGSHLRPHLK----TLRTLEAAGYLLDSKSAPATVSTL 71 Query: 66 EEGVKLRLYTPQARIFVLYGIHPGQEKIIF----DTNLIPVISSVPQLTFYSKLMS-CGV 120 E ++ + +++ NL ++ ++ Q + G Sbjct: 72 AEAEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ 131 Query: 121 SHPYALQVDTGFNRLGLSLQEAL---DFTHNSFNKKLGQLSLIISHLACADDPSSHVNSV 177 +++D+ +R G+ ++ + S+ + + Sbjct: 132 DFSVFIEIDSDDHRGGIKPSDSKLLTIAKTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQ 191 Query: 178 QLERFRTLISHYK--GIEASLASSSGILLGPNYHFQLT-------RPGISLYGGTD--KI 226 + + R ++ + GI ++ S P HF R G+ I Sbjct: 192 ECDAVRIARNNLETAGIHCAITSVGS---TPTAHFGEDFSDISEVRAGVYTTFDLVMKNI 248 Query: 227 NKSHPMQTVVTAEARIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGL 286 ++ +I K L++ G L+RDS A + G + G Sbjct: 249 GVCDFSHIAMSVVTTVIGHNKE-KNWLLTDSGWMALSRDSGTAGQNRDFGYGQVCKIDGS 307 Query: 287 DSEHSPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE---VGDYIQI 336 + + + + + +++D+ +E VG ++I Sbjct: 308 VLDGL-----------------CVNSTSQEHGVIELSDAYQLEDFPVGHQLRI 343 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 54.6 bits (131), Expect = 4e-08 Identities = 77/491 (15%), Positives = 128/491 (26%), Gaps = 232/491 (47%) Query: 4 NEFLRLKIDLTALKNNWHSMNA-LSGNARTAAVVKDN---AYGLGCE-------KIAP-A 51 N +L N+ H++ A L T V Y K + A Sbjct: 93 NCYLE--------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144 Query: 52 LYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPGQ--------E-KIIFDT---NL 99 L+ A V EG A++ ++G GQ E + ++ T + Sbjct: 145 LFRA---------VGEG--------NAQLVAIFG---GQGNTDDYFEELRDLYQTYHVLV 184 Query: 100 IPVISSV-PQL-----------TFYSK-------------------LMSCGVSHP----- 123 +I L +++ L+S +S P Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244 Query: 124 ----YAL--QVDTGFNRLGLS---LQEAL-----------------------DFTHNSFN 151 Y + ++ LG + L+ L F + Sbjct: 245 QLAHYVVTAKL------LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-- 296 Query: 152 KKLGQLSLII---SHLACAD---DPS-------------SHVNSVQ-LERFRTLISHYKG 191 +K + I + A + PS S + S+ L + + + Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNK 355 Query: 192 IEASLASSSGILL----GPNYHFQLTRPGISLYG------------GTD---------KI 226 + L + + + G + ++ P SLYG G D K+ Sbjct: 356 TNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414 Query: 227 NKSH-------PMQT--VVTAEARIILIRKALAGELVSYGGQKKLTRDSL-IAVAAIGYA 276 S+ P + +V A I K L VS+ + I V Y Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLIN---KDLVKNNVSFNA------KDIQIPV----YD 461 Query: 277 DGYPLTLSGLD-SEHSPSVFLGGKGFIKGYMVPILGK-ITMDM------TMFDITDSLSI 328 T G D S S+ + I T F T Sbjct: 462 -----TFDGSDLRVLSGSI------------SERIVDCIIRLPVKWETTTQFKAT----- 499 Query: 329 EVGDYIQIFGP 339 +I FGP Sbjct: 500 ----HILDFGP 506 Score = 38.0 bits (88), Expect = 0.003 Identities = 59/369 (15%), Positives = 95/369 (25%), Gaps = 161/369 (43%) Query: 103 ISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSF------------ 150 ++ +L K + + +L + + L L N + Sbjct: 54 PTTPAEL--VGKFLG----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107 Query: 151 -----NKKLGQLSLIISH----LACADDPSSHV------NSVQ----------------- 178 + L + +I + A P +V Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167 Query: 179 --LERFRTLISHYKGIEASLASSSGILLGPNYHFQLTR-P--GISLYG-GTDKINK--SH 230 E R L Y + L S L +L R ++ G + I + + Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETL-----SELIRTTLDAEKVFTQGLN-ILEWLEN 221 Query: 231 PMQT-----VVTAEARIILIRKALAG--ELVSY-------G---GQKKLTRDSL------ 267 P T +++ LI G +L Y G G+ R L Sbjct: 222 PSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGE---LRSYLKGATGH 273 Query: 268 ---IAVAA------------------------IGYA--DGYP---LTLSGL-DS----EH 290 + A IG + YP L S L DS E Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333 Query: 291 SPSVFLGGKGFIKGYMVPILGKITMDMTMFDITDSLSIE-VGDYIQIFG---PDIKLDDV 346 PS P M I++ L+ E V DY+ P K ++ Sbjct: 334 VPS--------------P----------MLSISN-LTQEQVQDYVNKTNSHLPAGKQVEI 368 Query: 347 ALASGTTNY 355 +L +G N Sbjct: 369 SLVNGAKNL 377 Score = 36.1 bits (83), Expect = 0.013 Identities = 35/247 (14%), Positives = 63/247 (25%), Gaps = 102/247 (41%) Query: 183 RTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAE--- 239 R L + +E +L+ F ++ L ++ NK P T A Sbjct: 7 RPLTLSHGSLEHV------LLVPTASFFIASQ----LQ---EQFNKILPEPTEGFAADDE 53 Query: 240 --------ARII--LIRK-------------------------------ALAGELVSYGG 258 + + + ALA +L+ Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113 Query: 259 QKKLTRDSLI-----AVAAIG--YADGYPLTLSGL----DSEHSP--SVFLGGKGFIKGY 305 + LI A + S L ++ ++F GG+G Y Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIF-GGQGNTDDY 169 Query: 306 MVPILGKITMD--MTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVRIGT 363 + ++ L VGD I+ L + L T + + Sbjct: 170 ---------FEELRDLYQTYHVL---VGDLIKFSAE--TLSE--LIRTTLDAE------- 206 Query: 364 RYAKFYT 370 K +T Sbjct: 207 ---KVFT 210 Score = 34.1 bits (78), Expect = 0.048 Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 57/208 (27%) Query: 16 LKNNWHSM---NALSGNARTAAVVKD-----NAYGLGCEK--------IAPALYNAGVQD 59 ++ N+ +M + G +T + K+ +Y EK PAL Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL------- 1736 Query: 60 FFVTSVE----EGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKL 115 T +E E +K + P F + + G+ + + I S+ ++ FY + Sbjct: 1737 ---TLMEKAAFEDLKSKGLIPADATFAGHSL--GEYAALASLADVMSIESLVEVVFY-RG 1790 Query: 116 MSCGVSHP--------YAL-QVDTGFNRLGLSL-QEALDFTHNSFNKKLGQLSLIIS--- 162 M+ V+ P Y + ++ G R+ S QEAL + K+ G L I++ Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPG--RVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848 Query: 163 ----HLACAD----DPSSHV-NSVQLER 181 ++A D D ++V N ++L++ Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQK 1876 >3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Score = 52.0 bits (124), Expect = 2e-07 Identities = 37/257 (14%), Positives = 68/257 (26%), Gaps = 53/257 (20%) Query: 11 IDLTALKNNWHSMNALSGNARTAAVVKDNAYGL-------GCEKIAPALYNAGVQDFFVT 63 + + H + A A + + L +I A +AGV+ Sbjct: 20 ARAREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIM-AAIDAGVRMIGEN 78 Query: 64 SVEE-------------------GVKLRLYTPQARIFVLYGIHPGQE----KIIFDTNLI 100 +E GV A + I Q K++ + I Sbjct: 79 RPQEVTAKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTI 138 Query: 101 PVISSVPQLTFYSKLMSC-GVSHPYALQVDTGFNR--LGLSLQEALDFTHNSFNKKLGQL 157 + S+ S+ G++ L+V+ G A+ +L Sbjct: 139 ESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIEL 198 Query: 158 SLIISHLACADDPSSHVNSVQLERFRTLI-----SHYKGIEASLASSSG--------ILL 204 +++ A D + R S G + S G I Sbjct: 199 QGLMTIGAHVHDETV--IRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAE 256 Query: 205 GPNYHFQLTRPGISLYG 221 G + R G +++G Sbjct: 257 GST----IVRVGTAIFG 269 >1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Length = 256 Score = 33.0 bits (75), Expect = 0.13 Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 37/221 (16%) Query: 34 AVVKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGV-KLRLYTPQARIFVLYGIHPGQEK 92 V K I LY+ GV++F V+E + K +L + + G+ + K Sbjct: 45 VVSK----LKPASDIQ-ILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 99 Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSH-------PYALQVDTG--FNRLGLSLQEAL 143 + + + ++ L KL +Q++T + GL+ + + Sbjct: 100 DLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEI 159 Query: 144 DFTHNSF-NKKLGQLSL--IISHLACADDPSSHVNSVQLERFRTLISHYKGIEASLASS- 199 + F +++ + L +++ + +S + F TL+ K I+A +S Sbjct: 160 FEVIDFFLSEECKYIKLNGLMTIGSWNVSHE---DSKENRDFATLVEWKKKIDAKFGTSL 216 Query: 200 ------SG-----ILLGPNYHFQLTRPGISLYGGTDKINKS 229 S I G R G ++G N++ Sbjct: 217 KLSMGMSADFREAIRQGTA----EVRIGTDIFGARPPKNEA 253 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.4 bits (65), Expect = 1.2 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 39/154 (25%) Query: 10 KIDLTALKNNWHSMN---------ALSGNAR-TAAVVKDNAYGLGCEKIAPALYNAGVQD 59 K+ L L N WHS + A+ G R T + +N G EK+ GV+ Sbjct: 644 KLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKM-------GVRT 696 Query: 60 FFVTSVEEGVKLR-LYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLT-FYSKLMS 117 F + E L L TP+ + L P ++ D N + VP+L F +KL Sbjct: 697 F--SQKEMAFNLLGLLTPE--VVELCQKSP----VMADLN--GGLQFVPELKEFTAKLRK 746 Query: 118 CGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFN 151 V+T R +S++ AL+ H N Sbjct: 747 --------ELVETSEVRKAVSIETALE--HKVVN 770 >1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A Length = 318 Score = 28.9 bits (64), Expect = 1.9 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%) Query: 128 VDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLERFRTLIS 187 +D G +L + Q++L + SFN G+L + S L S Q+++ R Sbjct: 135 LDDGITKLNEA-QKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRK--- 190 Query: 188 HYKGIEASLASSSGILLGP 206 EA +++G+++GP Sbjct: 191 -----EAYAGAAAGVVVGP 204 >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 Score = 27.9 bits (61), Expect = 3.7 Identities = 4/41 (9%), Positives = 12/41 (29%) Query: 320 FDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 + G I +LD+ +++++ Sbjct: 40 INHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINT 80 >1jji_A Carboxylesterase; alpha-beta hydrolase fold; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 Length = 311 Score = 27.6 bits (60), Expect = 4.7 Identities = 8/44 (18%), Positives = 18/44 (40%) Query: 46 EKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQARIFVLYGIHPG 89 +++ V+D + +++R+Y + VL H G Sbjct: 45 RQLSQHERVERVEDRTIKGRNGDIRVRVYQQKPDSPVLVYYHGG 88 >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, E. coli, kelch repeat, beta-propeller, unknown function.; HET: MSE; 1.5A {Escherichia coli} Length = 357 Score = 26.8 bits (58), Expect = 7.5 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Query: 2 HSNEFLRLKIDLTALKNNWHSMNALSGNAR---TAAVVKDNAYGLG 44 + +L D A W ++ A G R T+A + N Y G Sbjct: 29 AGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFG 72 >3ell_A Hasap (heme acquisition protein hasap); alpha beta protein, heme-binding protein, heme binding protein; HET: HEM; 1.70A {Pseudomonas aeruginosa} Length = 184 Score = 26.7 bits (59), Expect = 7.7 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 20/87 (22%) Query: 93 IIFDTNLIPVISSVPQLTFYSKLMSCGVSHPYALQVDTGFNRLGLSLQEALDFTHNSFNK 152 I +L + S P T + KL S ++L + L +S Sbjct: 67 FIAGGDLHYTLFSNPSHTLWGKLDS-------------------IALGDTLTGGASSGGY 107 Query: 153 KLGQLSLIISHLACADDP-SSHVNSVQ 178 L + S+L +V Sbjct: 108 ALDSQEVSFSNLGLDSPIAQGRDGTVH 134 >1lln_A Antiviral protein 3; ribosome inactivating protein, polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A {Phytolacca americana} SCOP: d.165.1.1 Length = 262 Score = 26.8 bits (59), Expect = 9.0 Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 8/67 (11%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 + +L+ NW S+ + + K G + L + + + Sbjct: 187 FDDANGYQPDPXAISLEKNWDSV--------SXVIAKVGTSGDSTVTLPGDLXDENNKPW 238 Query: 61 FVTSVEE 67 ++ + Sbjct: 239 TTATMND 245 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0526 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,101,269 Number of extensions: 142320 Number of successful extensions: 429 Number of sequences better than 10.0: 1 Number of HSP's gapped: 367 Number of HSP's successfully gapped: 29 Length of query: 370 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 276 Effective length of database: 3,414,294 Effective search space: 942345144 Effective search space used: 942345144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.2 bits)