BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus
Liberibacter asiaticus str. psy62]
         (370 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 370

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/370 (100%), Positives = 370/370 (100%)

Query: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60
           MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF
Sbjct: 1   MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60

Query: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120
           FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV
Sbjct: 61  FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120

Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180
           SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE
Sbjct: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180

Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240
           RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA
Sbjct: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240

Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300
           RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG
Sbjct: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300

Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360
           FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR
Sbjct: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360

Query: 361 IGTRYAKFYT 370
           IGTRYAKFYT
Sbjct: 361 IGTRYAKFYT 370


>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 586

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 293 SVFLGGKGFIKGYMVP 308
           SVF+ GKGFI  Y+ P
Sbjct: 80  SVFIAGKGFINLYLSP 95


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 25.0 bits (53), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 13  LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA 51
           L    NN    + L+   RTA  V DN   + C  I  A
Sbjct: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646


>gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 104

 Score = 23.9 bits (50), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFD 96
          ++ ++Y   ARI  L     G++ +IFD
Sbjct: 43 IRTKIYIITARIIALIVFREGEKSLIFD 70


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 23.5 bits (49), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 36  VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78
           +KDN  G+   +I   L + G     + S E+GV L L   Q+
Sbjct: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,123
Number of Sequences: 1233
Number of extensions: 10058
Number of successful extensions: 21
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 370
length of database: 328,796
effective HSP length: 75
effective length of query: 295
effective length of database: 236,321
effective search space: 69714695
effective search space used: 69714695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)