BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] (370 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] Length = 370 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/370 (100%), Positives = 370/370 (100%) Query: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF Sbjct: 1 MHSNEFLRLKIDLTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPALYNAGVQDF 60 Query: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV Sbjct: 61 FVTSVEEGVKLRLYTPQARIFVLYGIHPGQEKIIFDTNLIPVISSVPQLTFYSKLMSCGV 120 Query: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE Sbjct: 121 SHPYALQVDTGFNRLGLSLQEALDFTHNSFNKKLGQLSLIISHLACADDPSSHVNSVQLE 180 Query: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA Sbjct: 181 RFRTLISHYKGIEASLASSSGILLGPNYHFQLTRPGISLYGGTDKINKSHPMQTVVTAEA 240 Query: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG Sbjct: 241 RIILIRKALAGELVSYGGQKKLTRDSLIAVAAIGYADGYPLTLSGLDSEHSPSVFLGGKG 300 Query: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR Sbjct: 301 FIKGYMVPILGKITMDMTMFDITDSLSIEVGDYIQIFGPDIKLDDVALASGTTNYDLLVR 360 Query: 361 IGTRYAKFYT 370 IGTRYAKFYT Sbjct: 361 IGTRYAKFYT 370 >gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 586 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 293 SVFLGGKGFIKGYMVP 308 SVF+ GKGFI Y+ P Sbjct: 80 SVFIAGKGFINLYLSP 95 >gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 954 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 16/39 (41%) Query: 13 LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA 51 L NN + L+ RTA V DN + C I A Sbjct: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 >gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] Length = 104 Score = 23.9 bits (50), Expect = 4.7, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 69 VKLRLYTPQARIFVLYGIHPGQEKIIFD 96 ++ ++Y ARI L G++ +IFD Sbjct: 43 IRTKIYIITARIIALIVFREGEKSLIFD 70 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 23.5 bits (49), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 36 VKDNAYGLGCEKIAPALYNAGVQDFFVTSVEEGVKLRLYTPQA 78 +KDN G+ +I L + G + S E+GV L L Q+ Sbjct: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQS 447 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.137 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 238,123 Number of Sequences: 1233 Number of extensions: 10058 Number of successful extensions: 21 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 7 length of query: 370 length of database: 328,796 effective HSP length: 75 effective length of query: 295 effective length of database: 236,321 effective search space: 69714695 effective search space used: 69714695 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)