HHsearch alignment for GI: 254780334 and conserved domain: COG0305
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair].
Probab=99.81 E-value=2.4e-18 Score=153.41 Aligned_cols=198 Identities=21% Similarity=0.329 Sum_probs=144.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
T Consensus 176 ~~Gi~tgf~~LD~~t~-G~~~~dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~ 254 (435)
T COG0305 176 LIGVPTGFTDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIESS 254 (435)
T ss_pred CCCCCCCCHHHHHHHC-CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCHH
T ss_conf 8514468345677733-774677799716899975899999999999855897599982679999999753401154510
Q ss_pred --HCCC----------------CCCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf --2015----------------7751000034--788999---9999731698289972168766542044556367999
Q gi|254780334|r 139 --RLNT----------------INSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 139 --Rl~~----------------~~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 255 kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~liviDYLQLm~~~~~~--~~R~qevs 332 (435)
T COG0305 255 KLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS--ENRKQEVS 332 (435)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC--CHHHHHHH
T ss_conf 0212542689999999999987617854337888878889999998887459738998865411367764--12688999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCCCCCC----CCCEEEEEEEEC
Q ss_conf 999999997530797899986303665-----------43311457877530278515556665----442156763202
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGTRNTQ----YDYRILRSVKNR 260 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~~~~~----~~~R~Lr~~KNR 260 (479)
T Consensus 333 eISr~LK~LAkEL~vPvIAlSQLsR~~E~R~dkrP~lSDLRESGsIEQDADiVmflyRde~y~~~~~~~g~aeiIi~K~R 412 (435)
T COG0305 333 EISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTPDRGEAEVIVAKNR 412 (435)
T ss_pred HHHHHHHHHHHHHCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHCCEEEEEECHHHCCCCCCCCCEEEEEEEECC
T ss_conf 99999999998748808864452441121145687555675578436657789998142322677788862899987436
Q ss_pred CCCCCCEEE
Q ss_conf 567651279
Q gi|254780334|r 261 FGPTDEIGV 269 (479)
Q Consensus 261 fG~t~e~gv 269 (479)
T Consensus 413 nGp~GtV~l 421 (435)
T COG0305 413 NGPTGTVKL 421 (435)
T ss_pred CCCCCEEEE
T ss_conf 898745999