HHsearch alignment for GI: 254780334 and conserved domain: COG0410
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].
Probab=96.93 E-value=0.023 Score=36.83 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC----HHHHHHH-----------HHHCCCCCCCHHEE
Q ss_conf 85787089995498751889999999998503981999986463----0478888-----------75201577510000
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEA----IGQIRLR-----------AQRLNTINSSVYIA 150 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs----~~Qi~~R-----------a~Rl~~~~~~i~~~ 150 (479)
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~-G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV-eENL~~g 102 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD-GEDITGLPPHERARLGIAYVPEGRRIFPRLTV-EENLLLG 102 (237)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEC-CEECCCCCHHHHHHCCEEECCCCCCCHHHCCH-HHHHHHH
T ss_conf 876898899989998888999999858987887069989-83567799789985776867521361000759-9987423
Q ss_pred ---------CCCCHHHH---------------------------HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf ---------34788999---------------------------999973169828997216876654204455636799
Q gi|254780334|r 151 ---------IETNVEDI---------------------------IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV 194 (479)
Q Consensus 151 ---------~e~~l~~i---------------------------l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv 194 (479)
T Consensus 103 ~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL-m~~PklLLLDEP------s~G---LaP~iv 172 (237)
T COG0410 103 AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL-MSRPKLLLLDEP------SEG---LAPKIV 172 (237)
T ss_pred HHCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCC------CCC---CCHHHH
T ss_conf 1024531000113899999786389884084467781999999999999-619988996588------667---688999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99999999975307978999863
Q gi|254780334|r 195 RTSVQAMIQYAKKNGVAMVLVGH 217 (479)
Q Consensus 195 re~~~~L~~~AK~~~i~viligh 217 (479)
T Consensus 173 ~~I~~~i~~l~~~~g~tIlLVEQ 195 (237)
T COG0410 173 EEIFEAIKELRKEGGMTILLVEQ 195 (237)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999999748948999942