HHsearch alignment for GI: 254780334 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=99.96 E-value=9.8e-30 Score=236.48 Aligned_cols=381 Identities=20% Similarity=0.301 Sum_probs=245.3
Q ss_pred CCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------CCCEEEEECCCCHH
Q ss_conf 6632378124888865-985787089995498751889999999998503----------------98199998646304
Q gi|254780334|r 69 ESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------KHRITYVSGEEAIG 131 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------g~~vlYvS~EEs~~ 131 (479)
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMP--G 405 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMP--G 405 (782)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC--H
T ss_conf 11689999999999986146788579997899887011899999995897799954765427775355312335687--2
Q ss_pred HHHHHHHHCCCCCCCHHEECCCCH----------HHHH------------HHHHHCCCCC---EEEEC---HHHHHHHHH
Q ss_conf 788887520157751000034788----------9999------------9997316982---89972---168766542
Q gi|254780334|r 132 QIRLRAQRLNTINSSVYIAIETNV----------EDII------------ATLITNEKPD---LVIID---SIQTLWSQT 183 (479)
Q Consensus 132 Qi~~Ra~Rl~~~~~~i~~~~e~~l----------~~il------------~~~i~~~~~~---~vVID---SIQtl~~~~ 183 (479)
T Consensus 406 rIiQ~mkka~~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe-v~yDLS~VmFiaTANsl~tIP~PL 483 (782)
T COG0466 406 KIIQGMKKAGVK-NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE-VPYDLSKVMFIATANSLDTIPAPL 483 (782)
T ss_pred HHHHHHHHHCCC-CCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCC-CCCCHHHEEEEEECCCCCCCCHHH
T ss_conf 899999986776-874786403331677778868888862697656761222016-766443258886037513298678
Q ss_pred HCCCCCCHHH-HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEEEEECCCCCCCCCCEEEE-EEEE-
Q ss_conf 0445563679-99999999997530797899986303665433-114578775302785155566654421567-6320-
Q gi|254780334|r 184 AESSPGTVIQ-VRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVLYFEGGTRNTQYDYRILR-SVKN- 259 (479)
Q Consensus 184 ~~s~~GsvsQ-vre~~~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr-~~KN- 259 (479)
T Consensus 484 lDRME--iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 484 LDRME--VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKI 561 (782)
T ss_pred HCCEE--EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43030--5642688869999999984456899975998233556589999999987676210389999999999999999
Q ss_pred CCCCCCCEEEEEECCCCCEEECCHHHHHHCC-CCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----CC
Q ss_conf 2567651279985156631101404555114-766767348997304897411553310115778772477604----68
Q gi|254780334|r 260 RFGPTDEIGVFEMSDKGLQEVSDPSKIFLSD-RDSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----WD 334 (479)
Q Consensus 260 RfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~-~~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----~d 334 (479)
T Consensus 562 ~~~~~k~~--~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~L~IE~~~~~Gkg~l---~lTG~LGdVM 636 (782)
T COG0466 562 LLKKEKSI--VKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDLLTIEAVKMPGKGKL---TLTGSLGDVM 636 (782)
T ss_pred HHCCCCCC--EEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCE---EEECCHHHHH
T ss_conf 72575662--442788999973986347531124788705854444247864899988871687507---9960579999
Q ss_pred HHHHHHHHHHHHHHC---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 666555589887511---11---024622210014-56111543258799999999724886887859998742473163
Q gi|254780334|r 335 SSRLAMILAVLEARC---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVR 407 (479)
Q Consensus 335 ~~rl~~llAvl~k~~---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~GeIR 407 (479)
T Consensus 637 KESa~~A~s~vrs~a~~~~i~~~~fek~dIHiHVPeGAtPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGEITLrG~VL 716 (782)
T COG0466 637 KESAQAALSYVRSRAEKLGIDPDFFEKRDIHIHVPEGATPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVL 716 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEE
T ss_conf 99999999999998987199833333451388789999999886158999999999973999888854124578630246
Q ss_pred EECCHHHHHHHHHHCCCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHHCC
Q ss_conf 4078899999999769989997757653228------5880899838399999986147
Q gi|254780334|r 408 AVGHMQQRLKEAEKIGFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKITAL 460 (479)
Q Consensus 408 ~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~~~ 460 (479)
T Consensus 717 pIGGLKEKllAA~R~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~deVlk~al~~ 775 (782)
T COG0466 717 PIGGLKEKLLAAHRGGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVG 775 (782)
T ss_pred ECCCHHHHHHHHHHCCCCEEECCCCCCCCHHHCCHHHHCCCEEEEECCHHHHHHHHHCC
T ss_conf 22559899999986598589646545014876779887497499925099999997168