HHsearch alignment for GI: 254780334 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=99.89 E-value=2.7e-21 Score=174.90 Aligned_cols=206 Identities=30% Similarity=0.351 Sum_probs=152.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 66323781248888659857870899954987518899999999985039819999864630478888752015775100
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 86568997418888368988997899993899868999999999776269858999920698999999988099778975
Q ss_pred ------E-------EC--------CCC---HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf ------0-------03--------478---89999999731698289972168766542044556367999999999997
Q gi|254780334|r 149 ------I-------AI--------ETN---VEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQY 204 (479)
Q Consensus 149 ------~-------~~--------e~~---l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~ 204 (479)
T Consensus 82 ~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~-----~~~r~~~~~l~~~ 156 (260)
T COG0467 82 EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDP-----ALVRRILLLLKRF 156 (260)
T ss_pred HCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCH-----HHHHHHHHHHHHH
T ss_conf 44406876312111254201046652289999999999986289889996630776652782-----5789999999987
Q ss_pred HHHCCCEEEEEEEECCCCCCCCH-HHHHHHHHEEEEEECCCCCCCCCCE-EEEEEEECC-CCCCCEEEEEECC-CCCEEE
Q ss_conf 53079789998630366543311-4578775302785155566654421-567632025-6765127998515-663110
Q gi|254780334|r 205 AKKNGVAMVLVGHVTKEGQIAGP-RVIEHMVDAVLYFEGGTRNTQYDYR-ILRSVKNRF-GPTDEIGVFEMSD-KGLQEV 280 (479)
Q Consensus 205 AK~~~i~vilighvTK~G~iAGp-~~LeH~VD~vl~~ege~~~~~~~~R-~Lr~~KNRf-G~t~e~gvf~m~~-~Gl~~v 280 (479)
T Consensus 157 ~~~~~~t~~~~~~~~~~~--~~~~~~~~~~vdgvI~l~~~~~~~-~~~r~~~~i~k~r~~~~~~~~~~~~i~~g~gi~i~ 233 (260)
T COG0467 157 LKKLGVTSLLTTEAPVEE--RGESGVEEYIVDGVIRLDLKEIEG-GGDRRYLRILKMRGTPHSLKVIPFEITDGEGIVVY 233 (260)
T ss_pred HHHCCEEEEEEECCCCCC--CCCCCCEEEEEEEEEEEEEEECCC-CEEEEEEEEEECCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 650684899997443346--665661421689999997772257-24888999983467335774599998278847993
Q ss_pred CC
Q ss_conf 14
Q gi|254780334|r 281 SD 282 (479)
Q Consensus 281 ~~ 282 (479)
T Consensus 234 ~~ 235 (260)
T COG0467 234 PE 235 (260)
T ss_pred CC
T ss_conf 46