HHsearch alignment for GI: 254780334 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=99.90 E-value=2.2e-21 Score=175.57 Aligned_cols=216 Identities=22% Similarity=0.311 Sum_probs=169.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 34556663237812488886598578708999549875188999999999850398199998646304788887520157
Q gi|254780334|r 64 ESIEEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTI 143 (479)
Q Consensus 64 ~~~~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~ 143 (479)
T Consensus 34 ~~~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p--~r~~~l~~~ 111 (279)
T COG0468 34 ERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDP--ERAKQLGVD 111 (279)
T ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHH
T ss_conf 876436601655055787746886553589984688765466899998886537980899958999899--999998875
Q ss_pred -CCCHHEECCCCHHHH---HHHHHHCCC--CCEEEECHHHHHHHHHHCCCCCCH-HHHH---HHHHHHHHHHHHCCCEEE
Q ss_conf -751000034788999---999973169--828997216876654204455636-7999---999999997530797899
Q gi|254780334|r 144 -NSSVYIAIETNVEDI---IATLITNEK--PDLVIIDSIQTLWSQTAESSPGTV-IQVR---TSVQAMIQYAKKNGVAMV 213 (479)
Q Consensus 144 -~~~i~~~~e~~l~~i---l~~~i~~~~--~~~vVIDSIQtl~~~~~~s~~Gsv-sQvr---e~~~~L~~~AK~~~i~vi 213 (479)
T Consensus 112 ~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d-~~~~~~~r~ls~~l~~L~~~a~~~~~~vi 190 (279)
T COG0468 112 LLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIED-GHLGLRARLLSKALRKLTRLANKYNTAVI 190 (279)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 42153686689779999999999875468878899825743463655485-34899999999999999999997495899
Q ss_pred EEEEE-CCCCCCC-------CHHHHHHHHHEEEEEECCCC--CCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECC
Q ss_conf 98630-3665433-------11457877530278515556--6654421567632025676512799851566311014
Q gi|254780334|r 214 LVGHV-TKEGQIA-------GPRVIEHMVDAVLYFEGGTR--NTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSD 282 (479)
Q Consensus 214 lighv-TK~G~iA-------Gp~~LeH~VD~vl~~ege~~--~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ 282 (479)
T Consensus 191 ~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~ 269 (279)
T COG0468 191 FTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLKEDVGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREG 269 (279)
T ss_pred EECCEEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 9784034067666886658772388755324777652244323568738999974798998765689965076466532