HHsearch alignment for GI: 254780334 and conserved domain: COG0552

Probab=96.98  E-value=0.017  Score=37.68  Aligned_cols=85  Identities=27%  Similarity=0.337  Sum_probs=63.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHH----HHHH
Q ss_conf             8708999549875188999999999850398199998646----3047888875201577510000347889----9999
Q gi|254780334|r   89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVE----DIIA  160 (479)
Q Consensus        89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~----~il~  160 (479)
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAaVafDAi~  215 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAAVAFDAIQ  215 (340)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCC--CCCCCHHHHHHHHH
T ss_conf             8679999934888637179999999997898699982334789999999999999599278259--99980899999999


Q ss_pred             HHHHCCCCCEEEECHH
Q ss_conf             9973169828997216
Q gi|254780334|r  161 TLITNEKPDLVIIDSI  176 (479)
Q Consensus       161 ~~i~~~~~~~vVIDSI  176 (479)
T Consensus       216 ~-Akar~~DvvliDTA  230 (340)
T COG0552         216 A-AKARGIDVVLIDTA  230 (340)
T ss_pred             H-HHHCCCCEEEEECC
T ss_conf             9-99769999999675