HHsearch alignment for GI: 254780334 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=1159.35 Aligned_cols=452 Identities=52% Similarity=0.867 Sum_probs=430.5
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--CCCCCCC-CCCCCEECCCCCCCCCCCCCCCCH
Q ss_conf 9876527898767563630077178889867079885247765554--4444555-665640313334556663237812
Q gi|254780334|r 1 MVKIRSQYFCQSCGEIHSRWIGKCDSCNAWNTIIEDSSRKESDQRF--SKTIKQG-HSISLFMLSEESIEEESRIQTHID 77 (479)
Q Consensus 1 m~k~k~~y~C~~Cg~~~~kW~G~Cp~C~~Wnt~~e~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~~~~~Ri~TGi~ 77 (479)
T Consensus 1 MaK~~t~f~C~~CG~~s~KW~GkCp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~Ri~tg~~ 80 (456)
T COG1066 1 MAKKKTAFVCQECGYVSPKWLGKCPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIE 80 (456)
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCHH
T ss_conf 99766278844578878621555988787431667302356555443344544567755414401011222242357818
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHH
Q ss_conf 48888659857870899954987518899999999985039819999864630478888752015775100003478899
Q gi|254780334|r 78 ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVED 157 (479)
Q Consensus 78 eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~ 157 (479)
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEHHCCHHH
T ss_conf 88765367723661799736898779899999999987059-57999677678999999998289964557741128999
Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHEE
Q ss_conf 99999731698289972168766542044556367999999999997530797899986303665433114578775302
Q gi|254780334|r 158 IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDAV 237 (479)
Q Consensus 158 il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~v 237 (479)
T Consensus 160 I~~~-l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtV 238 (456)
T COG1066 160 IIAE-LEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTV 238 (456)
T ss_pred HHHH-HHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHEEEEEEEE
T ss_conf 9999-985499789996541230263357998589999999999999987597399998882466326840043653689
Q ss_pred EEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf 78515556665442156763202567651279985156631101404555114766767348997304897411553310
Q gi|254780334|r 238 LYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSL 317 (479)
Q Consensus 238 l~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQAL 317 (479)
T Consensus 239 lyFEG---d~~~~~RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQAL 315 (456)
T COG1066 239 LYFEG---DRHSRYRILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQAL 315 (456)
T ss_pred EEEEC---CCCCCEEEEEHHCCCCCCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 99830---577755650032136776553268898438846803827867422677899867999996266359886120
Q ss_pred ECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 11577877247760468666555589887511110246222100145611154325879999999972488688785999
Q gi|254780334|r 318 VVPTSLGMPRRTVVGWDSSRLAMILAVLEARCNIKFGNHDVHLNIAGGYRISEPAADVAVAAALISSILSIPLPSDFVYF 397 (479)
Q Consensus 318 v~~~~~~~p~R~~~G~d~~rl~~llAvl~k~~~~~~~~~Di~~nv~gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~ 397 (479)
T Consensus 316 v~~s~~~nPrR~~~G~D~nRl~mllAVLek~~gl~l~~~DvyvnvaGG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~ 395 (456)
T COG1066 316 VSPSSFGNPRRVAVGLDQNRLAMLLAVLEKRLGLPLGDQDVYVNVAGGVKVTEPAADLAVALALVSSFRNRPLPQDTVVF 395 (456)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 36666888702760537558999999999861986668637998048776577268899999999986388899871899
Q ss_pred EEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCCCCCEEEEEECCHHHHHHHHHC
Q ss_conf 87424731634078899999999769989997757653228588089983839999998614
Q gi|254780334|r 398 GEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECKIGMLDRQYIKNLSDLVKKITA 459 (479)
Q Consensus 398 GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~~~~i~i~~v~~l~e~i~~l~~ 459 (479)
T Consensus 396 GEvgL~GeIR~V~~~~~RlkEA~klGFk~aivP~~~~~--~~~~~~~~~v~~l~~a~~~~~~ 455 (456)
T COG1066 396 GEVGLSGEIRPVPRGERRLKEAAKLGFKRAIVPKGNIP--LPEGIKVIGVSTLAEALEVVFD 455 (456)
T ss_pred EECCCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCC--CCCCCEEEEEECHHHHHHHHHC
T ss_conf 95035742542675889999999758977974687677--8888159985009999998744