HHsearch alignment for GI: 254780334 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.26  E-value=0.0033  Score=42.99  Aligned_cols=111  Identities=21%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEEC
Q ss_conf             23781248888659857870899954987518899999999985039819999864630478888752015775100003
Q gi|254780334|r   72 IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAI  151 (479)
Q Consensus        72 i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~  151 (479)
T Consensus       169 LPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~---AtFIrvvgSElVqKY------iG---EGaR---  231 (406)
T COG1222         169 LPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTD---ATFIRVVGSELVQKY------IG---EGAR---  231 (406)
T ss_pred             CCCCCHHHHHHC--CCCCCCCEEEECCCCCCHHHHHHHHHHCCC---CEEEEECCHHHHHHH------HC---CCHH---
T ss_conf             336688899974--999997127668999758899999872058---669994219999998------34---1169---


Q ss_pred             CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             478899999997316982899721687665420445563679999999999975
Q gi|254780334|r  152 ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA  205 (479)
Q Consensus       152 e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A  205 (479)
T Consensus       232 --lVRelF~-lArekaPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL  279 (406)
T COG1222         232 --LVRELFE-LAREKAPSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELL  279 (406)
T ss_pred             --HHHHHHH-HHHHCCCEEEEEECHHHHHCCCCCCCCCCH---HHHHHHHHHHH
T ss_conf             --9999999-874149849998311223111136888850---99999999999