HHsearch alignment for GI: 254780334 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=98.05 E-value=2.5e-05 Score=58.40 Aligned_cols=75 Identities=23% Similarity=0.427 Sum_probs=56.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf 87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r 89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP 168 (479)
Q Consensus 89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~ 168 (479)
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~--l~~~ 168 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRE--LKKV 168 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHH--HHHC
T ss_conf 588289989999879999999999999839849998859999999998745-------------5268999988--7528
Q ss_pred CEEEECHHHH
Q ss_conf 2899721687
Q gi|254780334|r 169 DLVIIDSIQT 178 (479)
Q Consensus 169 ~~vVIDSIQt 178 (479)
T Consensus 169 dlLIiDDlG~ 178 (254)
T COG1484 169 DLLIIDDIGY 178 (254)
T ss_pred CEEEEECCCC
T ss_conf 9899823677