HHsearch alignment for GI: 254780334 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.49 E-value=4e-12 Score=108.02 Aligned_cols=193 Identities=24% Similarity=0.286 Sum_probs=126.2
Q ss_pred CC-CCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 63-23781248888659857870899954987518899999999985039819999864630478888752015775100
Q gi|254780334|r 70 SR-IQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 70 ~R-i~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
T Consensus 7 ~~ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~ 86 (235)
T COG2874 7 KKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFL 86 (235)
T ss_pred HHHCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45206784777865169974676999988898548899999999887089548999840359999998886388716877
Q ss_pred E------EC-------------CCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 0------03-------------4788999999973169828997216876654204455636799999999999753079
Q gi|254780334|r 149 I------AI-------------ETNVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNG 209 (479)
Q Consensus 149 ~------~~-------------e~~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~ 209 (479)
T Consensus 87 l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~-~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gK 159 (235)
T COG2874 87 LSGRLLFFPVNLEPVNWGRRSARKLLDLLLE-FIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGK 159 (235)
T ss_pred HCCEEEEEEECCCCCCCCHHHHHHHHHHHHH-HHHHHCCCEEEEECCCHHHHCC------CHHHHHHHHHHHHHHHHCCC
T ss_conf 5062689993245422573778999999975-5775237789995343776526------49999999999999872897
Q ss_pred CEEEEEEE-ECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECC--CCCCCEEEEEEC
Q ss_conf 78999863-03665433114578775302785155566654421567632025--676512799851
Q gi|254780334|r 210 VAMVLVGH-VTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRF--GPTDEIGVFEMS 273 (479)
Q Consensus 210 i~viligh-vTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRf--G~t~e~gvf~m~ 273 (479)
T Consensus 160 -vIilTvhp~~l~e~~~~--rirs~~d~~l~L~~~~~-Gg~~~~~~~i~K~~ga~~s~~~~I~F~V~ 222 (235)
T COG2874 160 -VIILTVHPSALDEDVLT--RIRSACDVYLRLRLEEL-GGDLIKVLEIVKYRGARKSFQNIISFRVE 222 (235)
T ss_pred -EEEEEECHHHCCHHHHH--HHHHHHHEEEEEEHHHH-CCEEEEEEEEEEECCCHHHCCCCEEEEEC
T ss_conf -89999473433789999--99875202589870231-78455877876654713321774058855