HHsearch alignment for GI: 254780334 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=99.21 E-value=2.6e-10 Score=94.72 Aligned_cols=145 Identities=26% Similarity=0.378 Sum_probs=107.9
Q ss_pred CCCHHHHH-----HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------CCCEEEEECCCCHHHHHHH--
Q ss_conf 78124888-----865985787089995498751889999999998503----------9819999864630478888--
Q gi|254780334|r 74 THIDELDR-----VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------KHRITYVSGEEAIGQIRLR-- 136 (479)
Q Consensus 74 TGi~eLDr-----vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------g~~vlYvS~EEs~~Qi~~R-- 136 (479)
T Consensus 68 ~~~~eWdrs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~ 147 (402)
T COG3598 68 MRLSEWDRSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE 147 (402)
T ss_pred CCHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 57655173117566357765170589844886237689999999998647774533558880799982268688999999
Q ss_pred --HHHCCCCCCCHHEECCCCHH----------H----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf --75201577510000347889----------9----9999973169828997216876654204455636799999999
Q gi|254780334|r 137 --AQRLNTINSSVYIAIETNVE----------D----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 137 --a~Rl~~~~~~i~~~~e~~l~----------~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
T Consensus 148 ~v~a~mgLsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~----s~vqv~~fi~~ 223 (402)
T COG3598 148 PVRARMGLSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI----SDVQVKEFIKK 223 (402)
T ss_pred HHHHHCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC----HHHHHHHHHHH
T ss_conf 99987099857632200002456787200105899999999998747874997344542277411----16899999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCC
Q ss_conf 9997530797899986303665
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEG 222 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G 222 (479)
T Consensus 224 ~rkla~~l~caIiy~hHtskss 245 (402)
T COG3598 224 TRKLARNLECAIIYIHHTSKSS 245 (402)
T ss_pred HHHHHHHCCCEEEEEECCCCCC
T ss_conf 9999986277399994456566