HHsearch alignment for GI: 254780334 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=99.21  E-value=2.6e-10  Score=94.72  Aligned_cols=145  Identities=26%  Similarity=0.378  Sum_probs=107.9

Q ss_pred             CCCHHHHH-----HHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------CCCEEEEECCCCHHHHHHH--
Q ss_conf             78124888-----865985787089995498751889999999998503----------9819999864630478888--
Q gi|254780334|r   74 THIDELDR-----VTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------KHRITYVSGEEAIGQIRLR--  136 (479)
Q Consensus        74 TGi~eLDr-----vLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------g~~vlYvS~EEs~~Qi~~R--  136 (479)
T Consensus        68 ~~~~eWdrs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~  147 (402)
T COG3598          68 MRLSEWDRSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE  147 (402)
T ss_pred             CCHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf             57655173117566357765170589844886237689999999998647774533558880799982268688999999


Q ss_pred             --HHHCCCCCCCHHEECCCCHH----------H----HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             --75201577510000347889----------9----9999973169828997216876654204455636799999999
Q gi|254780334|r  137 --AQRLNTINSSVYIAIETNVE----------D----IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA  200 (479)
Q Consensus       137 --a~Rl~~~~~~i~~~~e~~l~----------~----il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~  200 (479)
T Consensus       148 ~v~a~mgLsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~----s~vqv~~fi~~  223 (402)
T COG3598         148 PVRARMGLSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI----SDVQVKEFIKK  223 (402)
T ss_pred             HHHHHCCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC----HHHHHHHHHHH
T ss_conf             99987099857632200002456787200105899999999998747874997344542277411----16899999999


Q ss_pred             HHHHHHHCCCEEEEEEEECCCC
Q ss_conf             9997530797899986303665
Q gi|254780334|r  201 MIQYAKKNGVAMVLVGHVTKEG  222 (479)
Q Consensus       201 L~~~AK~~~i~vilighvTK~G  222 (479)
T Consensus       224 ~rkla~~l~caIiy~hHtskss  245 (402)
T COG3598         224 TRKLARNLECAIIYIHHTSKSS  245 (402)
T ss_pred             HHHHHHHCCCEEEEEECCCCCC
T ss_conf             9999986277399994456566