HHsearch alignment for GI: 254780334 and conserved domain: COG4608
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].
Probab=97.87 E-value=0.0003 Score=50.59 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=86.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC--------CCHHHHHHHHHHCCCCCCCHHE----ECCC
Q ss_conf 857870899954987518899999999985039819999864--------6304788887520157751000----0347
Q gi|254780334|r 86 GFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE--------EAIGQIRLRAQRLNTINSSVYI----AIET 153 (479)
Q Consensus 86 Gl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~E--------Es~~Qi~~Ra~Rl~~~~~~i~~----~~e~ 153 (479)
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCE-EEECCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 97589878999368887787999997283888726-99868531113666799999999998098877863388303731
Q ss_pred CHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
Q ss_conf 88999999973169828997216876654204455636799999999999753079789998630366543311457877
Q gi|254780334|r 154 NVEDIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHM 233 (479)
Q Consensus 154 ~l~~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~ 233 (479)
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSi--------q-aqIlnLL~~lq~~~~lt~lFIsHD--------l~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSV--------Q-AQILNLLKDLQEELGLTYLFISHD--------LSVVRYI 176 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCHHHCCHHH--------H-HHHHHHHHHHHHHHCCEEEEEEEE--------HHHHHHH
T ss_conf 3356999999850986797437211012467--------9-999999999999859758999877--------7766640
Q ss_pred HHEEEEE
Q ss_conf 5302785
Q gi|254780334|r 234 VDAVLYF 240 (479)
Q Consensus 234 VD~vl~~ 240 (479)
T Consensus 177 sdri~Vm 183 (268)
T COG4608 177 SDRIAVM 183 (268)
T ss_pred CCCEEEE
T ss_conf 4447887