HHsearch alignment for GI: 254780334 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.63 E-value=0.0044 Score=42.05 Aligned_cols=99 Identities=21% Similarity=0.288 Sum_probs=71.4
Q ss_pred CHHHHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHH
Q ss_conf 12488886598---578708999549875188999999999850398199998646----30478888752015775100
Q gi|254780334|r 76 IDELDRVTGGG---FVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVY 148 (479)
Q Consensus 76 i~eLDrvLGGG---l~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~ 148 (479)
T Consensus 80 ~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~--~ 157 (433)
T PRK00771 80 YEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY--G 157 (433)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC--C
T ss_conf 99999984967656689858999737889789999999999997799467850678836899999999986388731--7
Q ss_pred EECCCCHHHHHHHHHH-CCCCCEEEECHH
Q ss_conf 0034788999999973-169828997216
Q gi|254780334|r 149 IAIETNVEDIIATLIT-NEKPDLVIIDSI 176 (479)
Q Consensus 149 ~~~e~~l~~il~~~i~-~~~~~~vVIDSI 176 (479)
T Consensus 158 ~~~~~dp~~i~~~a~~~~k~~DvviiDTA 186 (433)
T PRK00771 158 DPKEKDAVKIVKEGLEKLKKVDVIIVDTA 186 (433)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 88999999999999998456988999776