HHsearch alignment for GI: 254780334 and conserved domain: PRK04296
>PRK04296 thymidine kinase; Provisional.
Probab=97.20 E-value=0.0056 Score=41.28 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=84.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHC
Q ss_conf 708999549875188999999999850398199998646----3047888875201577510000347889999999731
Q gi|254780334|r 90 GSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITN 165 (479)
Q Consensus 90 Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~ 165 (479)
T Consensus 2 g~L~~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D~Ry~~~~I~S---h~g~~~~~~~v~~~~~i~~~~~~~~~~ 78 (197)
T PRK04296 2 AKLYFIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAIDDRYGEGKVVS---RIGLSREAILISSDTDIFELIEEEHEG 78 (197)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEC---CCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 55999993427888999999999999879959999853446577785786---789834689948789999999876304
Q ss_pred CCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCCCHHHHHHHHHEEEEEEC
Q ss_conf 6982899721687665420445563679999999999975307978999863036--6543311457877530278515
Q gi|254780334|r 166 EKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTK--EGQIAGPRVIEHMVDAVLYFEG 242 (479)
Q Consensus 166 ~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK--~G~iAGp~~LeH~VD~vl~~eg 242 (479)
T Consensus 79 ~~~dvI~IDEaQFf-~~---------~~i----~~~~~~~~~~~~~Viv~GLd~Df~~~~F~~~~~Li~~Ad~V~kl~a 143 (197)
T PRK04296 79 GKIDCVLIDEAQFL-DK---------EQV----VQLAEVVDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 143 (197)
T ss_pred CCCCEEEECCHHCC-CH---------HHH----HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEE
T ss_conf 78568997202127-98---------999----9999999831858999765033024865439999972680999743