HHsearch alignment for GI: 254780334 and conserved domain: PRK04328
>PRK04328 hypothetical protein; Provisional.
Probab=99.97 E-value=1.6e-29 Score=234.88 Aligned_cols=205 Identities=25% Similarity=0.302 Sum_probs=161.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC--
Q ss_conf 663237812488886598578708999549875188999999999850398199998646304788887520157751--
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSS-- 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~-- 146 (479)
T Consensus 3 ~eRv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyis~eE~~~~l~~~~~~~G~d~~~~~ 82 (250)
T PRK04328 3 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 82 (250)
T ss_pred CCEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 41103585667875159987996999982899998999999999998769977999972799999999998099868986
Q ss_pred ----HHEE-------------------CCCCHHH---HHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf ----0000-------------------3478899---9999973169828997216876654204455636799999999
Q gi|254780334|r 147 ----VYIA-------------------IETNVED---IIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQA 200 (479)
Q Consensus 147 ----i~~~-------------------~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~ 200 (479)
T Consensus 83 ~~g~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~rvVIDSit~l~~~~-------~~~~r~~l~~ 155 (250)
T PRK04328 83 EEGKFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAKRVVIDSVSTLYLTK-------PAVARSIVMQ 155 (250)
T ss_pred HCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCC-------HHHHHHHHHH
T ss_conf 569779985123333420000010136853599999999999985189889993707877458-------5889999999
Q ss_pred HHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCC--EEEEEECCCCC
Q ss_conf 9997530797899986303665-43311457877530278515556665442156763202567651--27998515663
Q gi|254780334|r 201 MIQYAKKNGVAMVLVGHVTKEG-QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDE--IGVFEMSDKGL 277 (479)
Q Consensus 201 L~~~AK~~~i~vilighvTK~G-~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e--~gvf~m~~~Gl 277 (479)
T Consensus 156 l~~~l~~~g~Ttll~~e~~~~~~~~~~~-~ve~~~DgvI~L~~~~~-~~~~~R~l~I~KmR-gs~h~~~~~~f~It~~GI 232 (250)
T PRK04328 156 LKRVLAGLGCTSIFVSQVSVGERGFGGP-GVEHAVDGIIRLDLDEI-DGELKRSLIVWKMR-GTKHSMRRHPFEITDKGI 232 (250)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCC-CEEEEEEEEEEEEEECC-CCEEEEEEEEEECC-CCCCCCCEEEEEECCCCE
T ss_conf 9999986898699997100365666778-65899989999888713-99799999999886-996589569999879968
Q ss_pred EEECCH
Q ss_conf 110140
Q gi|254780334|r 278 QEVSDP 283 (479)
Q Consensus 278 ~~v~~p 283 (479)
T Consensus 233 ~V~P~~ 238 (250)
T PRK04328 233 VVYPDK 238 (250)
T ss_pred EEECCH
T ss_conf 995441