HHsearch alignment for GI: 254780334 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=97.68  E-value=0.00074  Score=47.70  Aligned_cols=99  Identities=18%  Similarity=0.368  Sum_probs=68.5

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf             98578708999549875188999999999850398199998646304788887520157751000034788999999973
Q gi|254780334|r   85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT  164 (479)
Q Consensus        85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~  164 (479)
T Consensus        41 ~~~~~-~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------------------~-~~~~~-l-   95 (234)
T PRK05642         41 AGWTE-SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------------------P-ELLDN-L-   95 (234)
T ss_pred             CCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------------------H-HHHHH-H-
T ss_conf             78778-8389988999988999999999998079967997899987544---------------------9-99862-4-


Q ss_pred             CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             169828997216876654204455636799999999999753079789998630
Q gi|254780334|r  165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV  218 (479)
Q Consensus       165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv  218 (479)
T Consensus        96 -~~~d~l~IDDi~~i~g~--------~-~~e~~lF~l~N~~~~~~~~llits~~  139 (234)
T PRK05642         96 -EQYELVCIDDLDVIAGK--------A-DWEEALFHLFNRLRDSGRRLLLAASK  139 (234)
T ss_pred             -HHCCEEEEECHHHHCCC--------H-HHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             -22798989364554688--------5-99999999999999839959995787