HHsearch alignment for GI: 254780334 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=97.68 E-value=0.00074 Score=47.70 Aligned_cols=99 Identities=18% Similarity=0.368 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHH
Q ss_conf 98578708999549875188999999999850398199998646304788887520157751000034788999999973
Q gi|254780334|r 85 GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLIT 164 (479)
Q Consensus 85 GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~ 164 (479)
T Consensus 41 ~~~~~-~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------------------~-~~~~~-l- 95 (234)
T PRK05642 41 AGWTE-SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------------------P-ELLDN-L- 95 (234)
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------------------H-HHHHH-H-
T ss_conf 78778-8389988999988999999999998079967997899987544---------------------9-99862-4-
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 169828997216876654204455636799999999999753079789998630
Q gi|254780334|r 165 NEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHV 218 (479)
Q Consensus 165 ~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighv 218 (479)
T Consensus 96 -~~~d~l~IDDi~~i~g~--------~-~~e~~lF~l~N~~~~~~~~llits~~ 139 (234)
T PRK05642 96 -EQYELVCIDDLDVIAGK--------A-DWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred -HHCCEEEEECHHHHCCC--------H-HHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf -22798989364554688--------5-99999999999999839959995787