HHsearch alignment for GI: 254780334 and conserved domain: PRK05703

Probab=98.11  E-value=0.00014  Score=52.89  Aligned_cols=84  Identities=21%  Similarity=0.338  Sum_probs=62.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCC-CEEEEECCC----CHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHH
Q ss_conf             78708999549875188999999999850-398-199998646----304788887520157751000034788999999
Q gi|254780334|r   88 VRGSVILVGGDPGIGKSTLLMQTAASLAY-KKH-RITYVSGEE----AIGQIRLRAQRLNTINSSVYIAIETNVEDIIAT  161 (479)
Q Consensus        88 ~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~-~g~-~vlYvS~EE----s~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~  161 (479)
T Consensus       208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~--~~~~~l~~al~-  284 (412)
T PRK05703        208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVA--YDPKELAKALE-  284 (412)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHH-
T ss_conf             567369998888875676999999999997299817999837677779999999999719737984--79999999998-


Q ss_pred             HHHCCCCCEEEECHH
Q ss_conf             973169828997216
Q gi|254780334|r  162 LITNEKPDLVIIDSI  176 (479)
Q Consensus       162 ~i~~~~~~~vVIDSI  176 (479)
T Consensus       285 --~~~~~dlILIDTa  297 (412)
T PRK05703        285 --QLANCDLILIDTA  297 (412)
T ss_pred             --HHCCCCEEEEECC
T ss_conf             --7158997999689