HHsearch alignment for GI: 254780334 and conserved domain: PRK05922

>PRK05922 type III secretion system ATPase; Validated.
Probab=97.27  E-value=0.0066  Score=40.74  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=62.2

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHHC---CCCC
Q ss_conf             663237812488886598578708999549875188999999999850398199998-646304788887520---1577
Q gi|254780334|r   69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQRL---NTIN  144 (479)
Q Consensus        69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~Rl---~~~~  144 (479)
T Consensus       138 ~e~L~TGIraID~l~--pigrGQR~gIf~g~GvGKt~Ll~~ia~~~-~~~-v~V~alIGeR~-rEv~efie~~~~~~~~~  212 (434)
T PRK05922        138 QEIFPTGIKAIDAFL--TLGKGQRIGVFSEPGSGKSSLLSTIAKGS-KST-INVIALIGERG-REVREYIEQHKEGLKAQ  212 (434)
T ss_pred             CCCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHCC-CCC-EEEEEEEEEEH-HHHHHHHHHHHHCCCCC
T ss_conf             875547855673567--72467677730799997899998676536-787-59998455138-99999999866134521


Q ss_pred             CCHHEECCCC---HHH---------HHHHHHHCCCCCEEEECHHHHH
Q ss_conf             5100003478---899---------9999973169828997216876
Q gi|254780334|r  145 SSVYIAIETN---VED---------IIATLITNEKPDLVIIDSIQTL  179 (479)
Q Consensus       145 ~~i~~~~e~~---l~~---------il~~~i~~~~~~~vVIDSIQtl  179 (479)
T Consensus       213 ~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~  259 (434)
T PRK05922        213 RTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW  259 (434)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             03787503778878889999887679999997799679995478899