HHsearch alignment for GI: 254780334 and conserved domain: PRK05922
>PRK05922 type III secretion system ATPase; Validated.
Probab=97.27 E-value=0.0066 Score=40.74 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=62.2
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHHC---CCCC
Q ss_conf 663237812488886598578708999549875188999999999850398199998-646304788887520---1577
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVS-GEEAIGQIRLRAQRL---NTIN 144 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS-~EEs~~Qi~~Ra~Rl---~~~~ 144 (479)
T Consensus 138 ~e~L~TGIraID~l~--pigrGQR~gIf~g~GvGKt~Ll~~ia~~~-~~~-v~V~alIGeR~-rEv~efie~~~~~~~~~ 212 (434)
T PRK05922 138 QEIFPTGIKAIDAFL--TLGKGQRIGVFSEPGSGKSSLLSTIAKGS-KST-INVIALIGERG-REVREYIEQHKEGLKAQ 212 (434)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEEECCCCCCCHHHHHHHHHHCC-CCC-EEEEEEEEEEH-HHHHHHHHHHHHCCCCC
T ss_conf 875547855673567--72467677730799997899998676536-787-59998455138-99999999866134521
Q ss_pred CCHHEECCCC---HHH---------HHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5100003478---899---------9999973169828997216876
Q gi|254780334|r 145 SSVYIAIETN---VED---------IIATLITNEKPDLVIIDSIQTL 179 (479)
Q Consensus 145 ~~i~~~~e~~---l~~---------il~~~i~~~~~~~vVIDSIQtl 179 (479)
T Consensus 213 ~tvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~ 259 (434)
T PRK05922 213 RTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 03787503778878889999887679999997799679995478899