HHsearch alignment for GI: 254780334 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=97.40 E-value=0.011 Score=39.21 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=82.5
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHHC-C-CCCC
Q ss_conf 66323781248888659857870899954987518899999999985039819999-8646304788887520-1-5775
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYV-SGEEAIGQIRLRAQRL-N-TINS 145 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYv-S~EEs~~Qi~~Ra~Rl-~-~~~~ 145 (479)
T Consensus 146 ~epL~TGIkaID~l~--pigrGQR~gIfgg~GvGKTtLl~~i~~~~~-~-d~vV~~lIGeRgr-Ev~ef~e~~l~~~l~~ 220 (450)
T PRK06002 146 DTPLRTGVRVIDIFT--PLCAGQRIGIFAGSGVGKSTLLAMLARADA-F-DTVVVALVGERGR-EVREFLEDTLADHLSK 220 (450)
T ss_pred CCCCCCCHHHHHHHC--CCCCCCEEEECCCCCCCHHHHHHHHHHHCC-C-CEEEEEEEEEEHH-HHHHHHHHHHHCCCCE
T ss_conf 876631031334214--601487777426899987599999986258-9-8799998647489-9999999876422000
Q ss_pred CHHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHH---------HHH---HCCCCCCHHHHHHHHHHH
Q ss_conf 100003478---89---------999999731698289972168766---------542---044556367999999999
Q gi|254780334|r 146 SVYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLW---------SQT---AESSPGTVIQVRTSVQAM 201 (479)
Q Consensus 146 ~i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~---------~~~---~~s~~GsvsQvre~~~~L 201 (479)
T Consensus 221 svvV~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf---~~l~~L 297 (450)
T PRK06002 221 AVAVVATGDESPMMRRLAPKTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVF---SELPRL 297 (450)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHH
T ss_conf 59997058898288765565544379999967996799982617888899999987589997567783277---660688
Q ss_pred HHHH-H-H---CCCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 9975-3-0---79789998630366543311--45787753027851
Q gi|254780334|r 202 IQYA-K-K---NGVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 202 ~~~A-K-~---~~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
T Consensus 298 lERag~~~~~~GSITal~~V-~~~~dD~~~pI~d~~~silDGhIvLs 343 (450)
T PRK06002 298 LERAGPGAEGGGSITGIFSV-LVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred HHHHCCCCCCCCCEEEEEEE-EECCCCCCCCHHHHHHHHCCEEEEEC
T ss_conf 87622577787306888888-71388767757887867735499984