HHsearch alignment for GI: 254780334 and conserved domain: PRK06893

>PRK06893 DNA replication initiation factor; Validated.
Probab=97.49  E-value=0.002  Score=44.60  Aligned_cols=94  Identities=16%  Similarity=0.322  Sum_probs=62.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHHHHHHHHHHCCCC
Q ss_conf             87089995498751889999999998503981999986463047888875201577510000347889999999731698
Q gi|254780334|r   89 RGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVEDIIATLITNEKP  168 (479)
Q Consensus        89 ~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~~il~~~i~~~~~  168 (479)
T Consensus        38 ~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------~--------------~~~~l~~-l~--~~   92 (229)
T PRK06893         38 KQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------F--------------SPAVLEN-LE--QQ   92 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------C--------------CHHHHHH-HH--HC
T ss_conf             6987999899999889999999999997189859997377564--------0--------------6999987-65--47


Q ss_pred             CEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             289972168766542044556367999999999997530797899986
Q gi|254780334|r  169 DLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVG  216 (479)
Q Consensus       169 ~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilig  216 (479)
T Consensus        93 d~l~iDDi~~i~g~~---------~~e~~lF~l~N~l~~~~~~~ll~s  131 (229)
T PRK06893         93 DLVCLDDLQAVIGNE---------EWELAIFDLFNRIKESGKTLLLIS  131 (229)
T ss_pred             CEEEEECHHHHCCCH---------HHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             979996723424883---------899999999999997599179985