HHsearch alignment for GI: 254780334 and conserved domain: PRK06904
>PRK06904 replicative DNA helicase; Validated.
Probab=99.90 E-value=5.4e-22 Score=180.00 Aligned_cols=214 Identities=17% Similarity=0.287 Sum_probs=150.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985039-81999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKK-HRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g-~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
T Consensus 201 ~~Gi~TG~~~LD~~t-~Gl~~g~LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~~ 279 (472)
T PRK06904 201 VTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQT 279 (472)
T ss_pred CCEECCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 623228979997441-5887575799973798756899999999999955995799778799999999999986499988
Q ss_pred HC--C----------------CC--CCCHHEECCC--CHHHHHHH---HH-HCCCCCEEEECHHHHHHHHHHCCCCCCHH
Q ss_conf 20--1----------------57--7510000347--88999999---97-31698289972168766542044556367
Q gi|254780334|r 139 RL--N----------------TI--NSSVYIAIET--NVEDIIAT---LI-TNEKPDLVIIDSIQTLWSQTAESSPGTVI 192 (479)
Q Consensus 139 Rl--~----------------~~--~~~i~~~~e~--~l~~il~~---~i-~~~~~~~vVIDSIQtl~~~~~~s~~Gsvs 192 (479)
T Consensus 280 ~i~~g~~l~~~e~~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~~~l~~vvIDYLqL~~~~~~--~~~r~~ 357 (472)
T PRK06904 280 KIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF--EDNRTL 357 (472)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--CCCHHH
T ss_conf 864688560999999999999984689816846999999999999999998738997899638866048887--777889
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-----CCCCCCCEEEEE
Q ss_conf 999999999997530797899986303665-----------4331145787753027851555-----666544215676
Q gi|254780334|r 193 QVRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-----RNTQYDYRILRS 256 (479)
Q Consensus 193 Qvre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-----~~~~~~~R~Lr~ 256 (479)
T Consensus 358 ei~~isr~LK~lAkel~ipvi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~~eliv 437 (472)
T PRK06904 358 EIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKGVAEIII 437 (472)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCHHCCCCCCCCCCCCEEEEE
T ss_conf 99999999999999979988997326843112799988602022523015428689996442004888767788379999
Q ss_pred EEECCCCCCCEEE-EEECCCCCEEECCHHH
Q ss_conf 3202567651279-9851566311014045
Q gi|254780334|r 257 VKNRFGPTDEIGV-FEMSDKGLQEVSDPSK 285 (479)
Q Consensus 257 ~KNRfG~t~e~gv-f~m~~~Gl~~v~~ps~ 285 (479)
T Consensus 438 aKnR~G~~G~v~~~f~~~~~rF~~~~~~~~ 467 (472)
T PRK06904 438 GKQRNGPIGRVRLAFQGQYSRFDNLANIPQ 467 (472)
T ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 747789861699998578774304578987