HHsearch alignment for GI: 254780334 and conserved domain: PRK07773
>PRK07773 replicative DNA helicase; Validated.
Probab=99.84 E-value=1.1e-19 Score=163.29 Aligned_cols=266 Identities=21% Similarity=0.275 Sum_probs=172.2
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--HCCCC
Q ss_conf 5666323781248888659857870899954987518899999999985-03981999986463047888875--20157
Q gi|254780334|r 67 EEESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--RLNTI 143 (479)
Q Consensus 67 ~~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~ 143 (479)
T Consensus 181 ~~l~GvpTG~~~ld~~~-~g~~~~~l~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEMs~~ql~~Rlls~~~~i~ 259 (868)
T PRK07773 181 GLAPGVPTGFYDLDEMT-NGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSLEMSKEEIVMRLLSAEAKIK 259 (868)
T ss_pred CCCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 99878688979998763-18887767999828977777899999999998659965897305678899999998760787
Q ss_pred -------------------------CCCHHEECC--CCHHHH---HHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------------------751000034--788999---99997316982899721687665420445563679
Q gi|254780334|r 144 -------------------------NSSVYIAIE--TNVEDI---IATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 144 -------------------------~~~i~~~~e--~~l~~i---l~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 260 ~~~lr~G~l~~~~~~~~~~a~~~l~~~pl~IdDtp~isi~eirakaRrlk~~~~l~lIvvDYLQLm~~~~--~~~~R~qe 337 (868)
T PRK07773 260 LSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMMEIRSKARRLQQKANLKLIVVDYLQLMTSGK--KYESRQQE 337 (868)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCC--CCCCHHHH
T ss_conf 7664168889899999999999986198888479999999999999998652699889996155247898--87629899
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-CCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEE-------EEECCCCCC
Q ss_conf 99999999997530797899986303665-4331145787753027851555666544215676-------320256765
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-QIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRS-------VKNRFGPTD 265 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~-------~KNRfG~t~ 265 (479)
T Consensus 338 vs~isr~LK~lAkeL~vPVialsQl~R~vE~R~~krP~lsdLresgc~~~d-------~~v~~ad~~~~~~~~~lv~~~~ 410 (868)
T PRK07773 338 VSEFSRHLKLLAKELEVPVIALSQLNRGPEQRTDKRPMLSDLRESGCLTAS-------TRILRADTGAEVAIGELMRSGE 410 (868)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCC-------CEEEECCCCCCCCHHHHHHCCC
T ss_conf 999989999999875897898710365542246777301003332785888-------2488647887233999872447
Q ss_pred CEEEEEECCCCCEEECCHHHHHHCCCCC------------CCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC-
Q ss_conf 1279985156631101404555114766------------767348997304897411553310115778772477604-
Q gi|254780334|r 266 EIGVFEMSDKGLQEVSDPSKIFLSDRDS------------TSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG- 332 (479)
Q Consensus 266 e~gvf~m~~~Gl~~v~~ps~~fl~~~~~------------~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G- 332 (479)
T Consensus 411 ~~~~~~l~~~~~~~~~~~~~v~~~G~k~v~~l~t~~gr~i~~t~~H~~lt~~gw~~l----~~L~~GdrIAvPr~lp~~~ 486 (868)
T PRK07773 411 RPMVWSLDERLRMVARPMSNVFPTGRKEVFRLRTASGREVEATGNHPFLTIDGWKPL----DELSVGDRIALPRRVPEPI 486 (868)
T ss_pred CCEEEEECCCCEEEECCCCCEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCEEH----HHCCCCCHHCCCCCCCCCC
T ss_conf 741578657751875033320005653489998535528997357745452345687----5558733110500068864
Q ss_pred ----CCHHHHHHHHHHHHH
Q ss_conf ----686665555898875
Q gi|254780334|r 333 ----WDSSRLAMILAVLEA 347 (479)
Q Consensus 333 ----~d~~rl~~llAvl~k 347 (479)
T Consensus 487 ~~~~l~d~ev~lL-a~LlG 504 (868)
T PRK07773 487 DTQRMTDSELILL-GHLIG 504 (868)
T ss_pred CCCCCCHHHHHHH-HHHHC
T ss_conf 6677977888898-98760