HHsearch alignment for GI: 254780334 and conserved domain: PRK08006
>PRK08006 replicative DNA helicase; Provisional.
Probab=99.91 E-value=1.6e-22 Score=183.87 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=145.4
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH---------
Q ss_conf 66323781248888659857870899954987518899999999985-03981999986463047888875---------
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------- 138 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------- 138 (479)
T Consensus 204 i~Gi~TGf~~LD~~t-~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEMs~~ql~~Rlla~~s~v~~~ 282 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQT 282 (471)
T ss_pred CCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 743668838898641-6882173899994699876999999999999866995799816799999999999974477755
Q ss_pred -------------HC----C--CCCCCHHEECC--CCHHHHHH---HHHH-CCCCCEEEECHHHHHHHHHHCCCCCCHHH
Q ss_conf -------------20----1--57751000034--78899999---9973-16982899721687665420445563679
Q gi|254780334|r 139 -------------RL----N--TINSSVYIAIE--TNVEDIIA---TLIT-NEKPDLVIIDSIQTLWSQTAESSPGTVIQ 193 (479)
Q Consensus 139 -------------Rl----~--~~~~~i~~~~e--~~l~~il~---~~i~-~~~~~~vVIDSIQtl~~~~~~s~~GsvsQ 193 (479)
T Consensus 283 ~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~~--~~r~~e 360 (471)
T PRK08006 283 RIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLS--DNRTLE 360 (471)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC--CCHHHH
T ss_conf 453688799999999999999975188577368999899999999999986489868996388661678744--106689
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECCC-C---CCCCCCEEEEEEE
Q ss_conf 99999999997530797899986303665-----------4331145787753027851555-6---6654421567632
Q gi|254780334|r 194 VRTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGGT-R---NTQYDYRILRSVK 258 (479)
Q Consensus 194 vre~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege~-~---~~~~~~R~Lr~~K 258 (479)
T Consensus 361 i~~isr~lK~lAkel~ipVi~LsQLnR~~e~R~dkrP~lsDLReSG~IEqdAD~V~~l~R~~~y~~~~~~~~~~elivaK 440 (471)
T PRK08006 361 IAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGK 440 (471)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999699689970168310016999987340224340154286899975503357888878816999973
Q ss_pred ECCCCCCCEEEE
Q ss_conf 025676512799
Q gi|254780334|r 259 NRFGPTDEIGVF 270 (479)
Q Consensus 259 NRfG~t~e~gvf 270 (479)
T Consensus 441 nR~G~~G~v~l~ 452 (471)
T PRK08006 441 QRNGPIGTVRLT 452 (471)
T ss_pred CCCCCCEEEEEE
T ss_conf 688986069999