HHsearch alignment for GI: 254780334 and conserved domain: PRK08082

>PRK08082 consensus.
Probab=99.91  E-value=1.1e-22  Score=185.01  Aligned_cols=200  Identities=23%  Similarity=0.341  Sum_probs=147.0

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHH--------
Q ss_conf             666323781248888659857870899954987518899999999985-03981999986463047888875--------
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLA-YKKHRITYVSGEEAIGQIRLRAQ--------  138 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a-~~g~~vlYvS~EEs~~Qi~~Ra~--------  138 (479)
T Consensus       182 ~~~Gi~TGf~~LD~lt-~G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l~~R~la~~s~i~~  260 (453)
T PRK08082        182 DITGIPTGFTELDRMT-AGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGADQLVMRMLCAEGNIDA  260 (453)
T ss_pred             CCCCCCCCHHHHHHHH-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCH
T ss_conf             9775548848888641-477758579998678875789999999999985599489973138989999999971558886


Q ss_pred             -HC--C----------------CCCCCHHEECC--CCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHH
Q ss_conf             -20--1----------------57751000034--7889999---99973169828997216876654204455636799
Q gi|254780334|r  139 -RL--N----------------TINSSVYIAIE--TNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQV  194 (479)
Q Consensus       139 -Rl--~----------------~~~~~i~~~~e--~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQv  194 (479)
T Consensus       261 ~~i~~g~l~~~e~~~i~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~~livIDYlqLi~~~~~-~~~~r~~ev  339 (453)
T PRK08082        261 QRLRTGSLTSDDWGKLTMAMGSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQGLGMILIDYLQLIQGSGR-SGENRQQEV  339 (453)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCC-CCCCHHHHH
T ss_conf             6775189999999999999998506973897899998999999999999866998899950773377898-887899999


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHEEEEEECC-CCC---CCCCCEEEEEEEE
Q ss_conf             9999999997530797899986303665-----------433114578775302785155-566---6544215676320
Q gi|254780334|r  195 RTSVQAMIQYAKKNGVAMVLVGHVTKEG-----------QIAGPRVIEHMVDAVLYFEGG-TRN---TQYDYRILRSVKN  259 (479)
Q Consensus       195 re~~~~L~~~AK~~~i~vilighvTK~G-----------~iAGp~~LeH~VD~vl~~ege-~~~---~~~~~R~Lr~~KN  259 (479)
T Consensus       340 ~~isr~LK~lAkel~ipvi~lsQLnR~~e~R~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~e~ivaK~  419 (453)
T PRK08082        340 SEISRTLKALARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDRETENKNIIEIIIAKQ  419 (453)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEECCHHHCCCCCCCCCEEEEEEECC
T ss_conf             99999999999996997999644784312379999771010265520533668989655654388888788069999736


Q ss_pred             CCCCCCCEEE
Q ss_conf             2567651279
Q gi|254780334|r  260 RFGPTDEIGV  269 (479)
Q Consensus       260 RfG~t~e~gv  269 (479)
T Consensus       420 RnG~~g~v~l  429 (453)
T PRK08082        420 RNGPVGTVEL  429 (453)
T ss_pred             CCCCCCEEEE
T ss_conf             8998615999