HHsearch alignment for GI: 254780334 and conserved domain: PRK08472
>PRK08472 fliI flagellum-specific ATP synthase; Validated.
Probab=97.42 E-value=0.0059 Score=41.11 Aligned_cols=165 Identities=14% Similarity=0.253 Sum_probs=85.1
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HCC-CCCCC
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875-201-57751
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ-RLN-TINSS 146 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~-Rl~-~~~~~ 146 (479)
T Consensus 139 ~epl~TGIraID~l~--pigrGQR~gIf~g~GvGKt~Ll~~i~~~~~-~dv~V~~lIGeR~-rEv~efie~~~~~~l~~t 214 (435)
T PRK08472 139 DEVFSVGVKSIDGLL--TCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-APIKVVALIGERG-REIPEFIEKNLGGDLSNT 214 (435)
T ss_pred CCCCCCCCEEEECCC--CCCCCCEEECCCCCCCCCCHHHHHHHHHHC-CCEEEEEEECEEH-HHHHHHHHHHHHHCCCCE
T ss_conf 874115855774326--624776651235899983357888877615-9988997613122-789999998741132225
Q ss_pred HHEECCCC---HH---------HHHHHHHHCCCCCEEEECHHHHHHH---------HHH---CCCCCCHHHHHHHHHHHH
Q ss_conf 00003478---89---------9999997316982899721687665---------420---445563679999999999
Q gi|254780334|r 147 VYIAIETN---VE---------DIIATLITNEKPDLVIIDSIQTLWS---------QTA---ESSPGTVIQVRTSVQAMI 202 (479)
Q Consensus 147 i~~~~e~~---l~---------~il~~~i~~~~~~~vVIDSIQtl~~---------~~~---~s~~GsvsQvre~~~~L~ 202 (479)
T Consensus 215 vvvvatsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYp~~vf---~~l~~l~ 291 (435)
T PRK08472 215 VIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVL---SLLPQLM 291 (435)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHH
T ss_conf 9998468899899988888999999999867984899843627889999999986589997556383577---6657888
Q ss_pred HHH-HHC---CCEEEEEEEECCCCCCCCH--HHHHHHHHEEEEEE
Q ss_conf 975-307---9789998630366543311--45787753027851
Q gi|254780334|r 203 QYA-KKN---GVAMVLVGHVTKEGQIAGP--RVIEHMVDAVLYFE 241 (479)
Q Consensus 203 ~~A-K~~---~i~vilighvTK~G~iAGp--~~LeH~VD~vl~~e 241 (479)
T Consensus 292 ERag~~~~~GSIT~i~~v~-~~gdD~~~pi~d~~~si~DG~ivLs 335 (435)
T PRK08472 292 ERAGKEEGKGSITAFFTVL-VEGDDMSDPIADQSRSILDGHIVLS 335 (435)
T ss_pred HHHCCCCCCCCEEEEEEEE-ECCCCCCCCCHHHHHHHCCEEEEEC
T ss_conf 8642588985148887785-0488767774555545406079997