HHsearch alignment for GI: 254780334 and conserved domain: PRK08506
>PRK08506 replicative DNA helicase; Provisional.
Probab=99.89 E-value=5.9e-22 Score=179.75 Aligned_cols=204 Identities=18% Similarity=0.300 Sum_probs=144.6
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH--HCCCC---
Q ss_conf 6632378124888865985787089995498751889999999998503981999986463047888875--20157---
Q gi|254780334|r 69 ESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQ--RLNTI--- 143 (479)
Q Consensus 69 ~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~--Rl~~~--- 143 (479)
T Consensus 173 ~~Gi~TGf~~LD~~t-~Gl~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ 251 (473)
T PRK08506 173 IIGLDTGFKQLNKMT-KGFNKGDLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEMPAEQLMLRMLSAKTSIPLQN 251 (473)
T ss_pred CCCCCCCHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 534778808788872-6998562799950799867899999999999659965898224799999999999728878310
Q ss_pred ----------------------CCCHHEECC--CCHHHHHH---HHHHC-CCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ----------------------751000034--78899999---99731-698289972168766542044556367999
Q gi|254780334|r 144 ----------------------NSSVYIAIE--TNVEDIIA---TLITN-EKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 144 ----------------------~~~i~~~~e--~~l~~il~---~~i~~-~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 252 lr~g~l~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~--~~~R~~ev~ 329 (473)
T PRK08506 252 LRTGDLDDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKN--FKDRHLQIS 329 (473)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC--CCCHHHHHH
T ss_conf 006899999999999999998659889988999999999999999999769987899636755468887--530889999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCHHHHHHHHHEEEEEECC-CCC----CCCC---------
Q ss_conf 9999999975307978999863036654-----------33114578775302785155-566----6544---------
Q gi|254780334|r 196 TSVQAMIQYAKKNGVAMVLVGHVTKEGQ-----------IAGPRVIEHMVDAVLYFEGG-TRN----TQYD--------- 250 (479)
Q Consensus 196 e~~~~L~~~AK~~~i~vilighvTK~G~-----------iAGp~~LeH~VD~vl~~ege-~~~----~~~~--------- 250 (479)
T Consensus 330 ~ISr~LK~lAkEl~vPViaLSQLnR~vE~R~dkrP~lSDLReSGsIEQDADvV~flyR~~yY~~~~~~~~~~~~~~~~~~ 409 (473)
T PRK08506 330 EISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEDKAKKEGKE 409 (473)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999969979997036876555789987600113433135437689996527753665333333321111321
Q ss_pred ------------CEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf ------------2156763202567651279985156
Q gi|254780334|r 251 ------------YRILRSVKNRFGPTDEIGVFEMSDK 275 (479)
Q Consensus 251 ------------~R~Lr~~KNRfG~t~e~gvf~m~~~ 275 (479)
T Consensus 410 ~~~~~~~~~~~~~ae~iiaK~RnG~tG~v~l~f~~~~ 446 (473)
T PRK08506 410 ERRIHKQNKSIEEAEIIIGKNRNGPTGTVKLIFQKEF 446 (473)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCC
T ss_conf 1122223567772489996577898725999986587