HHsearch alignment for GI: 254780334 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=99.86 E-value=6e-20 Score=165.06 Aligned_cols=198 Identities=21% Similarity=0.236 Sum_probs=143.0
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV 147 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i 147 (479)
T Consensus 2 ~~~~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~ 81 (230)
T PRK08533 2 KLAKIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKK 81 (230)
T ss_pred CCCCEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHH
T ss_conf 75401057135788717898898489998689987899999999999878986999994389999999999869981799
Q ss_pred H------EEC-------CCCHHHHHHH---HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 0------003-------4788999999---97316982899721687665420445563679999999999975307978
Q gi|254780334|r 148 Y------IAI-------ETNVEDIIAT---LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA 211 (479)
Q Consensus 148 ~------~~~-------e~~l~~il~~---~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~ 211 (479)
T Consensus 82 ~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~-----~~~~~~~~~~lk~l~s~gktI 156 (230)
T PRK08533 82 LISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDAS-----EVQIRDLMAFFKRISSLNKVI 156 (230)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC-----HHHHHHHHHHHHHHHHCCCEE
T ss_conf 757967999613433540457899999973266437989999053188516777-----899999999999998589889
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECC--CCCCCEEEEEEC
Q ss_conf 99986303665433114578775302785155566654421567632025--676512799851
Q gi|254780334|r 212 MVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRF--GPTDEIGVFEMS 273 (479)
Q Consensus 212 vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRf--G~t~e~gvf~m~ 273 (479)
T Consensus 157 ilTv~p~~~~e~~l--~~lrs~aDv~i~L~~~~v-Gg~~~r~i~V~K~~ga~~~~~~~I~F~V~ 217 (230)
T PRK08533 157 ILTANPKELPESVL--LILRTASTILIRLEVKVF-GGDLKNSAKIVKYNMAKGSFQKIIPFRVE 217 (230)
T ss_pred EEEECCCCCCHHHH--HHHHEEEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 99956331362454--420410489999873610-98899999999844898777864789980