HHsearch alignment for GI: 254780334 and conserved domain: PRK08533

>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=99.86  E-value=6e-20  Score=165.06  Aligned_cols=198  Identities=21%  Similarity=0.236  Sum_probs=143.0

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             66632378124888865985787089995498751889999999998503981999986463047888875201577510
Q gi|254780334|r   68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSV  147 (479)
Q Consensus        68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i  147 (479)
T Consensus         2 ~~~~~~~~~d~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~   81 (230)
T PRK08533          2 KLAKIELDGDELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKK   81 (230)
T ss_pred             CCCCEECCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHH
T ss_conf             75401057135788717898898489998689987899999999999878986999994389999999999869981799


Q ss_pred             H------EEC-------CCCHHHHHHH---HHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             0------003-------4788999999---97316982899721687665420445563679999999999975307978
Q gi|254780334|r  148 Y------IAI-------ETNVEDIIAT---LITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVA  211 (479)
Q Consensus       148 ~------~~~-------e~~l~~il~~---~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~  211 (479)
T Consensus        82 ~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~-----~~~~~~~~~~lk~l~s~gktI  156 (230)
T PRK08533         82 LISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDAS-----EVQIRDLMAFFKRISSLNKVI  156 (230)
T ss_pred             HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCC-----HHHHHHHHHHHHHHHHCCCEE
T ss_conf             757967999613433540457899999973266437989999053188516777-----899999999999998589889


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECC--CCCCCEEEEEEC
Q ss_conf             99986303665433114578775302785155566654421567632025--676512799851
Q gi|254780334|r  212 MVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRF--GPTDEIGVFEMS  273 (479)
Q Consensus       212 vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRf--G~t~e~gvf~m~  273 (479)
T Consensus       157 ilTv~p~~~~e~~l--~~lrs~aDv~i~L~~~~v-Gg~~~r~i~V~K~~ga~~~~~~~I~F~V~  217 (230)
T PRK08533        157 ILTANPKELPESVL--LILRTASTILIRLEVKVF-GGDLKNSAKIVKYNMAKGSFQKIIPFRVE  217 (230)
T ss_pred             EEEECCCCCCHHHH--HHHHEEEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCCCEEEEEEC
T ss_conf             99956331362454--420410489999873610-98899999999844898777864789980