HHsearch alignment for GI: 254780334 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.50  E-value=0.0019  Score=44.74  Aligned_cols=212  Identities=16%  Similarity=0.205  Sum_probs=97.1

Q ss_pred             CCCCCCCCCCCCCCH-------HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf             334556663237812-------4888865985787089995498751889999999998503981999986463047888
Q gi|254780334|r   63 EESIEEESRIQTHID-------ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL  135 (479)
Q Consensus        63 ~~~~~~~~Ri~TGi~-------eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~  135 (479)
T Consensus        12 ~~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~-HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~   90 (352)
T PRK09112         12 DIDGVPSPSENNRLFGHEEARAFLAQAYREGRLH-HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASP   90 (352)
T ss_pred             CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf             8899989644646278699999999999849965-246535899808999999999998669986668655678887877


Q ss_pred             HHHHCCCC-CCCHH-E-----------ECCCCHHHHHHHHHH-------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             87520157-75100-0-----------034788999999973-------1698289972168766542044556367999
Q gi|254780334|r  136 RAQRLNTI-NSSVY-I-----------AIETNVEDIIATLIT-------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVR  195 (479)
Q Consensus       136 Ra~Rl~~~-~~~i~-~-----------~~e~~l~~il~~~i~-------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr  195 (479)
T Consensus        91 ~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR-~l~~~~~~~~~~~~~kv~Iid~ad~m~--------------~  155 (352)
T PRK09112         91 LWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIR-RVTHFLSQTSGDGNWRIVIIDPADDMN--------------R  155 (352)
T ss_pred             HHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHH--------------H
T ss_conf             8999974899995655343220214543357779999-999984548866880699981878746--------------9


Q ss_pred             HHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE-
Q ss_conf             999999997530--79789998630366543311457877530278515556665442156763202567651279985-
Q gi|254780334|r  196 TSVQAMIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM-  272 (479)
Q Consensus       196 e~~~~L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m-  272 (479)
T Consensus       156 ~aaNALLK~LEEPp~~~~fiLit~~--~~-----~ll~TI~S-------------------RCq~~~f~pL~~~di~~~L  209 (352)
T PRK09112        156 NAANAILKTLEEPPARALFILISHS--SG-----RLLPTIRS-------------------RCQPISLKPLDDDELKKAL  209 (352)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEECC--HH-----HCHHHHHH-------------------HCCCCCCCCCCHHHHHHHH
T ss_conf             9999999985348987489988699--77-----77689997-------------------4332148893989999999


Q ss_pred             ----CCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf             ----1566311014045551147667673489973048974115533101
Q gi|254780334|r  273 ----SDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLV  318 (479)
Q Consensus       273 ----~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv  318 (479)
T Consensus       210 ~~i~~~~~~~--~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~~~~ll  257 (352)
T PRK09112        210 SHLGSKQGIS--AGEETEALLQRSEGSVRKALLLLNYGGLEIIDTVDQLL  257 (352)
T ss_pred             HHHHHCCCCC--CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9875126899--87999999987089988999874487799999999998