HHsearch alignment for GI: 254780334 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=97.50 E-value=0.0019 Score=44.74 Aligned_cols=212 Identities=16% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCCH-------HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 334556663237812-------4888865985787089995498751889999999998503981999986463047888
Q gi|254780334|r 63 EESIEEESRIQTHID-------ELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRL 135 (479)
Q Consensus 63 ~~~~~~~~Ri~TGi~-------eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~ 135 (479)
T Consensus 12 ~~~g~p~Pr~~~~liGq~~~~~~L~~a~~~gRl~-HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~ 90 (352)
T PRK09112 12 DIDGVPSPSENNRLFGHEEARAFLAQAYREGRLH-HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASP 90 (352)
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 8899989644646278699999999999849965-246535899808999999999998669986668655678887877
Q ss_pred HHHHCCCC-CCCHH-E-----------ECCCCHHHHHHHHHH-------CCCCCEEEECHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 87520157-75100-0-----------034788999999973-------1698289972168766542044556367999
Q gi|254780334|r 136 RAQRLNTI-NSSVY-I-----------AIETNVEDIIATLIT-------NEKPDLVIIDSIQTLWSQTAESSPGTVIQVR 195 (479)
Q Consensus 136 Ra~Rl~~~-~~~i~-~-----------~~e~~l~~il~~~i~-------~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvr 195 (479)
T Consensus 91 ~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR-~l~~~~~~~~~~~~~kv~Iid~ad~m~--------------~ 155 (352)
T PRK09112 91 LWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIR-RVTHFLSQTSGDGNWRIVIIDPADDMN--------------R 155 (352)
T ss_pred HHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHHH--------------H
T ss_conf 8999974899995655343220214543357779999-999984548866880699981878746--------------9
Q ss_pred HHHHHHHHHHHH--CCCEEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEE-
Q ss_conf 999999997530--79789998630366543311457877530278515556665442156763202567651279985-
Q gi|254780334|r 196 TSVQAMIQYAKK--NGVAMVLVGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEM- 272 (479)
Q Consensus 196 e~~~~L~~~AK~--~~i~vilighvTK~G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gvf~m- 272 (479)
T Consensus 156 ~aaNALLK~LEEPp~~~~fiLit~~--~~-----~ll~TI~S-------------------RCq~~~f~pL~~~di~~~L 209 (352)
T PRK09112 156 NAANAILKTLEEPPARALFILISHS--SG-----RLLPTIRS-------------------RCQPISLKPLDDDELKKAL 209 (352)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECC--HH-----HCHHHHHH-------------------HCCCCCCCCCCHHHHHHHH
T ss_conf 9999999985348987489988699--77-----77689997-------------------4332148893989999999
Q ss_pred ----CCCCCEEECCHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEE
Q ss_conf ----1566311014045551147667673489973048974115533101
Q gi|254780334|r 273 ----SDKGLQEVSDPSKIFLSDRDSTSPGTAVFAGIEGTRALLVEIQSLV 318 (479)
Q Consensus 273 ----~~~Gl~~v~~ps~~fl~~~~~~~~Gs~v~~~~eG~r~~lvEvQALv 318 (479)
T Consensus 210 ~~i~~~~~~~--~~~~~~~l~~~a~GS~~~Al~L~~~~gl~i~~~~~~ll 257 (352)
T PRK09112 210 SHLGSKQGIS--AGEETEALLQRSEGSVRKALLLLNYGGLEIIDTVDQLL 257 (352)
T ss_pred HHHHHCCCCC--CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9875126899--87999999987089988999874487799999999998