HHsearch alignment for GI: 254780334 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.97 E-value=3.3e-29 Score=232.64 Aligned_cols=207 Identities=27% Similarity=0.364 Sum_probs=164.5
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf 66632378124888865985787089995498751889999999998503-98199998646304788887520157751
Q gi|254780334|r 68 EESRIQTHIDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK-KHRITYVSGEEAIGQIRLRAQRLNTINSS 146 (479)
Q Consensus 68 ~~~Ri~TGi~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~-g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~ 146 (479)
T Consensus 2 ~ieRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~ 81 (501)
T PRK09302 2 GIEKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQK 81 (501)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHH
T ss_conf 97421448711577854898899779998389999999999999999885599789998579999999999984998689
Q ss_pred H------HE------------ECCCCHHHHH---HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0------00------------0347889999---9997316982899721687665420445563679999999999975
Q gi|254780334|r 147 V------YI------------AIETNVEDII---ATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYA 205 (479)
Q Consensus 147 i------~~------------~~e~~l~~il---~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~A 205 (479)
T Consensus 82 ~~~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvViDSlt~l~~~~~-----~~~~~R~~l~~L~~~l 156 (501)
T PRK09302 82 LIDEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVIDSIEALFQQYD-----NPAVVRRELFRLFAWL 156 (501)
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCC-----CHHHHHHHHHHHHHHH
T ss_conf 73268389996156743111334476899999999999971999999999789987635-----8789999999999999
Q ss_pred HHCCCEEEEEEEECCC-CCCCCHHHHHHHHHEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEE--EEECCCCCEEEC
Q ss_conf 3079789998630366-543311457877530278515556665442156763202567651279--985156631101
Q gi|254780334|r 206 KKNGVAMVLVGHVTKE-GQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGV--FEMSDKGLQEVS 281 (479)
Q Consensus 206 K~~~i~vilighvTK~-G~iAGp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~~KNRfG~t~e~gv--f~m~~~Gl~~v~ 281 (479)
T Consensus 157 ~~~g~T~llt~E~~~~~~~~~~~g~Ee~vaDGVI~L~~~~-~~~~~~R~L~V~KmR-Gs~~~~g~h~f~It~~Gi~V~P 233 (501)
T PRK09302 157 KQKGVTAVMTGERGDEYGPIARYGVEEFVSDCVVILRNVL-EGEKRTRTLEILKYR-GTTHGKGEYPFTITEDGISVLP 233 (501)
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCHHHHHCCEEEEEEEEC-CCCCCEEEEEEEECC-CCCCCCCCEEEEECCCCEEEEE
T ss_conf 8779779998756666787543452442013078876541-488525899999835-8866687233798799889980