HHsearch alignment for GI: 254780334 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=97.28 E-value=0.0069 Score=40.62 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=72.4
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHEECCCCHH
Q ss_conf 24888865985787089995498751889999999998503981999986463047888875201577510000347889
Q gi|254780334|r 77 DELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQIRLRAQRLNTINSSVYIAIETNVE 156 (479)
Q Consensus 77 ~eLDrvLGGGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Qi~~Ra~Rl~~~~~~i~~~~e~~l~ 156 (479)
T Consensus 37 ~ll~~l~~~-~g~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~s-----------------gGaiLG 98 (325)
T PRK09435 37 ELLDALLPH-TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRT-----------------GGSILG 98 (325)
T ss_pred HHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----------------CCCHHH
T ss_conf 999986301-79825997427999868899999999999679858999978999988-----------------861010
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHE
Q ss_conf 99999973169828997216876654204455636799999999999753079789998630366543311457877530
Q gi|254780334|r 157 DIIATLITNEKPDLVIIDSIQTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVLVGHVTKEGQIAGPRVIEHMVDA 236 (479)
Q Consensus 157 ~il~~~i~~~~~~~vVIDSIQtl~~~~~~s~~GsvsQvre~~~~L~~~AK~~~i~vilighvTK~G~iAGp~~LeH~VD~ 236 (479)
T Consensus 99 Dr~Rm~-~~~~~~~~fiRs~~s------rg~lgg~~---~~~~~~~~~~~a~g~d~i~iETvGvG---Q~e~~v~~~~d~ 165 (325)
T PRK09435 99 DKTRME-RLSRHPNAFIRPSPS------SGTLGGVA---RKTRETMLLCEAAGFDVILVETVGVG---QSETAVAGMVDF 165 (325)
T ss_pred HHHHHH-HHCCCCCEEEEECCC------CCCCCCCC---HHHHHHHHHHHHCCCCEEEEEECCCC---HHHHHHHHHCCE
T ss_conf 388887-614799848840677------88867733---54999999999779998999706777---148899874266
Q ss_pred EEEEE
Q ss_conf 27851
Q gi|254780334|r 237 VLYFE 241 (479)
Q Consensus 237 vl~~e 241 (479)
T Consensus 166 ~~~~~ 170 (325)
T PRK09435 166 FLLLQ 170 (325)
T ss_pred EEEEE
T ss_conf 88883