HHsearch alignment for GI: 254780334 and conserved domain: PRK09519
>PRK09519 recA recombinase A; Reviewed.
Probab=99.78 E-value=1.1e-17 Score=148.71 Aligned_cols=172 Identities=27% Similarity=0.360 Sum_probs=142.0
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 6656403133345566632378124888865-985787089995498751889999999998503981999986463047
Q gi|254780334|r 54 HSISLFMLSEESIEEESRIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGEEAIGQ 132 (479)
Q Consensus 54 ~~~~~~~l~~~~~~~~~Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~g~~vlYvS~EEs~~Q 132 (479)
T Consensus 23 GkGsiM~Lg~~~~~~v~~IsTGSl~LD~ALGiGG~PrGRIvEIyGpESSGKTTLALH~IAeaQK~GG~aAfIDAEhAlDp 102 (790)
T PRK09519 23 GKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred CCCCEEECCCCCCCCCCEECCCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 88525777887777654450461678887616884660499987897765899999999999853997999952002599
Q ss_pred HHHHHHHCCCCCCCHHEECCCCHHH---HHHHHHHCCCCCEEEECHHHHHHH-HHHCCCCCC--H-HHHHHHHHHHHHH-
Q ss_conf 8888752015775100003478899---999997316982899721687665-420445563--6-7999999999997-
Q gi|254780334|r 133 IRLRAQRLNTINSSVYIAIETNVED---IIATLITNEKPDLVIIDSIQTLWS-QTAESSPGT--V-IQVRTSVQAMIQY- 204 (479)
Q Consensus 133 i~~Ra~Rl~~~~~~i~~~~e~~l~~---il~~~i~~~~~~~vVIDSIQtl~~-~~~~s~~Gs--v-sQvre~~~~L~~~- 204 (479)
T Consensus 103 --~yA~~LGVdld~LLisQPdtGEqALeIae~LIrSgavDlIVVDSVAALvPKaEieGemgD~~vGlQARLMSqALRKLT 180 (790)
T PRK09519 103 --DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMT 180 (790)
T ss_pred --HHHHHHCCCHHHCEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --999983957678068579808899999999985489548998053456878886164566428899999999999998
Q ss_pred --HHHCCCEEEEEEEE-CCCCCCCCH
Q ss_conf --53079789998630-366543311
Q gi|254780334|r 205 --AKKNGVAMVLVGHV-TKEGQIAGP 227 (479)
Q Consensus 205 --AK~~~i~vilighv-TK~G~iAGp 227 (479)
T Consensus 181 ~~I~ks~t~vIFINQlReKIGVMFGn 206 (790)
T PRK09519 181 GALNNSGTTAIFINQLRDKIGVMFGS 206 (790)
T ss_pred HHHHCCCEEEEEEEHHHHHHCCCCCC
T ss_conf 77630774999942104540570379