HHsearch alignment for GI: 254780334 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.89 E-value=7.1e-22 Score=179.15 Aligned_cols=164 Identities=16% Similarity=0.234 Sum_probs=142.2
Q ss_pred CEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHH----HHHHHHHCCCCCCCCHHHEECC-CCCCCCCC
Q ss_conf 348997304897411553310115778772477604686665555----8988751111024622210014-56111543
Q gi|254780334|r 297 GTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMI----LAVLEARCNIKFGNHDVHLNIA-GGYRISEP 371 (479)
Q Consensus 297 Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~l----lAvl~k~~~~~~~~~Di~~nv~-gG~~i~~p 371 (479)
T Consensus 4 a~v~s~al~Gi~~~~V~VEv~i~~---GlP~f~iVGLpd~av~EsreRVrsAl-~nsg~~~P~~rItVNLaPAdl~K~Gs 79 (506)
T PRK09862 4 SIVHTRAALGVNAPPITVEVHISK---GLPGLTMVGLPETTVKEARDRVRSAI-INSGYEYPAKKITINLAPADLPKEGG 79 (506)
T ss_pred EEEEEEEEECCEEEEEEEEEEECC---CCCCEEEECCCHHHHHHHHHHHHHHH-HHCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 567664230750169999998259---98622783784699999999999999-83899999880899707878888876
Q ss_pred CCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC-CCCEEEEEEC
Q ss_conf 25879999999972488688--78599987424731634078899999999769989997757653228-5880899838
Q gi|254780334|r 372 AADVAVAAALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK-IGMLDRQYIK 448 (479)
Q Consensus 372 a~DLaia~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~-~~~i~i~~v~ 448 (479)
T Consensus 80 ~fDLpIA~~iL~a~~qi~~~~l~~~~~~GEL~LdG~lr~v~G~lp~~l~a~~~g-~~~ivp~~n~~ea~~v~~~~v~~~~ 158 (506)
T PRK09862 80 RYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSG-RKIIVAKDNEDEVGLINGEGCLIAD 158 (506)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEECCCCHHHHHHHHHHCC-CEEEECCCCHHHHCCCCCCCEECCC
T ss_conf 431999999999769998244302488851255860430653689999999759-9899534645665056998287032
Q ss_pred CHHHHHHHHHCCCCCCC
Q ss_conf 39999998614764333
Q gi|254780334|r 449 NLSDLVKKITALQKKDK 465 (479)
Q Consensus 449 ~l~e~i~~l~~~~~~~~ 465 (479)
T Consensus 159 ~L~e~~~~l~g~~~~~~ 175 (506)
T PRK09862 159 HLQAVCAFLEGKHALER 175 (506)
T ss_pred CHHHHHHHHCCCCCCCC
T ss_conf 59999998659876788