HHsearch alignment for GI: 254780334 and conserved domain: PRK09862

>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.89  E-value=7.1e-22  Score=179.15  Aligned_cols=164  Identities=16%  Similarity=0.234  Sum_probs=142.2

Q ss_pred             CEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHH----HHHHHHHCCCCCCCCHHHEECC-CCCCCCCC
Q ss_conf             348997304897411553310115778772477604686665555----8988751111024622210014-56111543
Q gi|254780334|r  297 GTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVGWDSSRLAMI----LAVLEARCNIKFGNHDVHLNIA-GGYRISEP  371 (479)
Q Consensus       297 Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G~d~~rl~~l----lAvl~k~~~~~~~~~Di~~nv~-gG~~i~~p  371 (479)
T Consensus         4 a~v~s~al~Gi~~~~V~VEv~i~~---GlP~f~iVGLpd~av~EsreRVrsAl-~nsg~~~P~~rItVNLaPAdl~K~Gs   79 (506)
T PRK09862          4 SIVHTRAALGVNAPPITVEVHISK---GLPGLTMVGLPETTVKEARDRVRSAI-INSGYEYPAKKITINLAPADLPKEGG   79 (506)
T ss_pred             EEEEEEEEECCEEEEEEEEEEECC---CCCCEEEECCCHHHHHHHHHHHHHHH-HHCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             567664230750169999998259---98622783784699999999999999-83899999880899707878888876


Q ss_pred             CCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC-CCCEEEEEEC
Q ss_conf             25879999999972488688--78599987424731634078899999999769989997757653228-5880899838
Q gi|254780334|r  372 AADVAVAAALISSILSIPLP--SDFVYFGEVSLSGSVRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK-IGMLDRQYIK  448 (479)
Q Consensus       372 a~DLaia~ailSs~~~~~~~--~~~~~~GEl~L~GeIR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~-~~~i~i~~v~  448 (479)
T Consensus        80 ~fDLpIA~~iL~a~~qi~~~~l~~~~~~GEL~LdG~lr~v~G~lp~~l~a~~~g-~~~ivp~~n~~ea~~v~~~~v~~~~  158 (506)
T PRK09862         80 RYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSG-RKIIVAKDNEDEVGLINGEGCLIAD  158 (506)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHCCEEEEEECCCCCEEECCCCHHHHHHHHHHCC-CEEEECCCCHHHHCCCCCCCEECCC
T ss_conf             431999999999769998244302488851255860430653689999999759-9899534645665056998287032


Q ss_pred             CHHHHHHHHHCCCCCCC
Q ss_conf             39999998614764333
Q gi|254780334|r  449 NLSDLVKKITALQKKDK  465 (479)
Q Consensus       449 ~l~e~i~~l~~~~~~~~  465 (479)
T Consensus       159 ~L~e~~~~l~g~~~~~~  175 (506)
T PRK09862        159 HLQAVCAFLEGKHALER  175 (506)
T ss_pred             CHHHHHHHHCCCCCCCC
T ss_conf             59999998659876788