HHsearch alignment for GI: 254780334 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.97  E-value=1.3e-30  Score=242.86  Aligned_cols=375  Identities=19%  Similarity=0.307  Sum_probs=243.7

Q ss_pred             CCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------CCCEEEEECCCCHHHH
Q ss_conf             32378124888865-985787089995498751889999999998503----------------9819999864630478
Q gi|254780334|r   71 RIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------KHRITYVSGEEAIGQI  133 (479)
Q Consensus        71 Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------g~~vlYvS~EEs~~Qi  133 (479)
T Consensus       329 ~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgamp--Gri  406 (784)
T PRK10787        329 RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP--GKL  406 (784)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC--HHH
T ss_conf             799999999999986246778779964699877246999999985898699806887888882564334344368--389


Q ss_pred             HHHHHHCCCCCCCHHEECCCC---------HH-HHHHHHHHC------------CCCC---EEEECHHHHHHHHHHCCCC
Q ss_conf             888752015775100003478---------89-999999731------------6982---8997216876654204455
Q gi|254780334|r  134 RLRAQRLNTINSSVYIAIETN---------VE-DIIATLITN------------EKPD---LVIIDSIQTLWSQTAESSP  188 (479)
Q Consensus       134 ~~Ra~Rl~~~~~~i~~~~e~~---------l~-~il~~~i~~------------~~~~---~vVIDSIQtl~~~~~~s~~  188 (479)
T Consensus       407 i~~l~~a~~~-nPv~llDEiDK~~~~~~Gdp~salLE-vLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN-----~~~-ip  478 (784)
T PRK10787        407 IQKMAKVGVK-NPLFLLDEIDKMSSDMRGDPASALLE-VLDPEQNVAFSDHYLEVDYDLSDVMFVATSN-----SMN-IP  478 (784)
T ss_pred             HHHHHHHCCC-CCEEEEHHHHHHCCCCCCCHHHHHHH-HCCHHHCCCCCCCEEECCCCHHHEEEEEECC-----CCC-CC
T ss_conf             9999974898-85665003555224558998899998-4597655640003220464522258997327-----677-87


Q ss_pred             CCHHHHH--------HHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEEEEECCCCCCCCCCEEEEE-EE
Q ss_conf             6367999--------999999997530797899986303665433-1145787753027851555666544215676-32
Q gi|254780334|r  189 GTVIQVR--------TSVQAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVLYFEGGTRNTQYDYRILRS-VK  258 (479)
Q Consensus       189 GsvsQvr--------e~~~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~-~K  258 (479)
T Consensus       479 ~pL-lDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~  557 (784)
T PRK10787        479 APL-LDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK  557 (784)
T ss_pred             HHH-HHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             677-6312155411676788999999745399999828996567439999999875336544425168899999999999


Q ss_pred             EC-CCCCCCEEEEEECCCCCEEECCHHHHHHCCC-CCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----
Q ss_conf             02-5676512799851566311014045551147-66767348997304897411553310115778772477604----
Q gi|254780334|r  259 NR-FGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR-DSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG----  332 (479)
Q Consensus       259 NR-fG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~-~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G----  332 (479)
T Consensus       558 ~~~~~~--~~~~~~i~~~~l~~~lg~~~~~~~~~~~~~~~Gv~~GLawt~~GG~~l~iE~~~~~gkg---~l~lTG~lg~  632 (784)
T PRK10787        558 QLLLDK--SLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKG---KLTYTGSLGE  632 (784)
T ss_pred             HHHCCC--CCCCEEECHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECCCC---CEEEECCCHH
T ss_conf             997078--87855888999999829987881244136888579999981579768999999816988---6788624068


Q ss_pred             CCHHHHHHHHHHHHHHC---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCE
Q ss_conf             68666555589887511---11---024622210014-561115432587999999997248868878599987424731
Q gi|254780334|r  333 WDSSRLAMILAVLEARC---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGS  405 (479)
Q Consensus       333 ~d~~rl~~llAvl~k~~---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~Ge  405 (479)
T Consensus       633 vmkES~~~A~s~~r~~~~~~~i~~~~~~~~diHiH~P~Ga~pKDGPSAGit~~tal~S~~~~~~v~~~~amTGEitL~G~  712 (784)
T PRK10787        633 VMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQ  712 (784)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEE
T ss_conf             99999999999999989985899430126754895799999898742899999999999869998999655565660202


Q ss_pred             EEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHHCCC
Q ss_conf             634078899999999769989997757653228------58808998383999999861476
Q gi|254780334|r  406 VRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKITALQ  461 (479)
Q Consensus       406 IR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~~~~  461 (479)
T Consensus       713 VlpiGG~keK~laA~r~gi~~vi~P~~N~~d~~~ip~~v~~~l~~~~v~~~~ev~~~al~~~  774 (784)
T PRK10787        713 VLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE  774 (784)
T ss_pred             EEEECCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHCCCEEEEECCHHHHHHHHHHCC
T ss_conf             78207899999999984998999452123559874999886989999394999999997569