HHsearch alignment for GI: 254780334 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.97 E-value=1.3e-30 Score=242.86 Aligned_cols=375 Identities=19% Similarity=0.307 Sum_probs=243.7
Q ss_pred CCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC----------------CCCEEEEECCCCHHHH
Q ss_conf 32378124888865-985787089995498751889999999998503----------------9819999864630478
Q gi|254780334|r 71 RIQTHIDELDRVTG-GGFVRGSVILVGGDPGIGKSTLLMQTAASLAYK----------------KHRITYVSGEEAIGQI 133 (479)
Q Consensus 71 Ri~TGi~eLDrvLG-GGl~~Gs~~Li~G~PGvGKSTL~Lqia~~~a~~----------------g~~vlYvS~EEs~~Qi 133 (479)
T Consensus 329 ~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~DeaeirGHrrTYvgamp--Gri 406 (784)
T PRK10787 329 RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP--GKL 406 (784)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCC--HHH
T ss_conf 799999999999986246778779964699877246999999985898699806887888882564334344368--389
Q ss_pred HHHHHHCCCCCCCHHEECCCC---------HH-HHHHHHHHC------------CCCC---EEEECHHHHHHHHHHCCCC
Q ss_conf 888752015775100003478---------89-999999731------------6982---8997216876654204455
Q gi|254780334|r 134 RLRAQRLNTINSSVYIAIETN---------VE-DIIATLITN------------EKPD---LVIIDSIQTLWSQTAESSP 188 (479)
Q Consensus 134 ~~Ra~Rl~~~~~~i~~~~e~~---------l~-~il~~~i~~------------~~~~---~vVIDSIQtl~~~~~~s~~ 188 (479)
T Consensus 407 i~~l~~a~~~-nPv~llDEiDK~~~~~~Gdp~salLE-vLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN-----~~~-ip 478 (784)
T PRK10787 407 IQKMAKVGVK-NPLFLLDEIDKMSSDMRGDPASALLE-VLDPEQNVAFSDHYLEVDYDLSDVMFVATSN-----SMN-IP 478 (784)
T ss_pred HHHHHHHCCC-CCEEEEHHHHHHCCCCCCCHHHHHHH-HCCHHHCCCCCCCEEECCCCHHHEEEEEECC-----CCC-CC
T ss_conf 9999974898-85665003555224558998899998-4597655640003220464522258997327-----677-87
Q ss_pred CCHHHHH--------HHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CHHHHHHHHHEEEEEECCCCCCCCCCEEEEE-EE
Q ss_conf 6367999--------999999997530797899986303665433-1145787753027851555666544215676-32
Q gi|254780334|r 189 GTVIQVR--------TSVQAMIQYAKKNGVAMVLVGHVTKEGQIA-GPRVIEHMVDAVLYFEGGTRNTQYDYRILRS-VK 258 (479)
Q Consensus 189 GsvsQvr--------e~~~~L~~~AK~~~i~vilighvTK~G~iA-Gp~~LeH~VD~vl~~ege~~~~~~~~R~Lr~-~K 258 (479)
T Consensus 479 ~pL-lDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ler~i~~i~rk~~~ 557 (784)
T PRK10787 479 APL-LDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVK 557 (784)
T ss_pred HHH-HHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 677-6312155411676788999999745399999828996567439999999875336544425168899999999999
Q ss_pred EC-CCCCCCEEEEEECCCCCEEECCHHHHHHCCC-CCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEC----
Q ss_conf 02-5676512799851566311014045551147-66767348997304897411553310115778772477604----
Q gi|254780334|r 259 NR-FGPTDEIGVFEMSDKGLQEVSDPSKIFLSDR-DSTSPGTAVFAGIEGTRALLVEIQSLVVPTSLGMPRRTVVG---- 332 (479)
Q Consensus 259 NR-fG~t~e~gvf~m~~~Gl~~v~~ps~~fl~~~-~~~~~Gs~v~~~~eG~r~~lvEvQALv~~~~~~~p~R~~~G---- 332 (479)
T Consensus 558 ~~~~~~--~~~~~~i~~~~l~~~lg~~~~~~~~~~~~~~~Gv~~GLawt~~GG~~l~iE~~~~~gkg---~l~lTG~lg~ 632 (784)
T PRK10787 558 QLLLDK--SLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKG---KLTYTGSLGE 632 (784)
T ss_pred HHHCCC--CCCCEEECHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEECCCCEEEEEEEEEECCCC---CEEEECCCHH
T ss_conf 997078--87855888999999829987881244136888579999981579768999999816988---6788624068
Q ss_pred CCHHHHHHHHHHHHHHC---CC---CCCCCHHHEECC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCE
Q ss_conf 68666555589887511---11---024622210014-561115432587999999997248868878599987424731
Q gi|254780334|r 333 WDSSRLAMILAVLEARC---NI---KFGNHDVHLNIA-GGYRISEPAADVAVAAALISSILSIPLPSDFVYFGEVSLSGS 405 (479)
Q Consensus 333 ~d~~rl~~llAvl~k~~---~~---~~~~~Di~~nv~-gG~~i~~pa~DLaia~ailSs~~~~~~~~~~~~~GEl~L~Ge 405 (479)
T Consensus 633 vmkES~~~A~s~~r~~~~~~~i~~~~~~~~diHiH~P~Ga~pKDGPSAGit~~tal~S~~~~~~v~~~~amTGEitL~G~ 712 (784)
T PRK10787 633 VMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQ 712 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECEE
T ss_conf 99999999999999989985899430126754895799999898742899999999999869998999655565660202
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECHHHHHHCC------CCCEEEEEECCHHHHHHHHHCCC
Q ss_conf 634078899999999769989997757653228------58808998383999999861476
Q gi|254780334|r 406 VRAVGHMQQRLKEAEKIGFLSGVFPESAKGECK------IGMLDRQYIKNLSDLVKKITALQ 461 (479)
Q Consensus 406 IR~V~~i~~ri~eA~~~G~~~~iiP~~n~~e~~------~~~i~i~~v~~l~e~i~~l~~~~ 461 (479)
T Consensus 713 VlpiGG~keK~laA~r~gi~~vi~P~~N~~d~~~ip~~v~~~l~~~~v~~~~ev~~~al~~~ 774 (784)
T PRK10787 713 VLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNE 774 (784)
T ss_pred EEEECCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHCCCEEEEECCHHHHHHHHHHCC
T ss_conf 78207899999999984998999452123559874999886989999394999999997569